G42914


Basic Information

Item Value
gene id G42914
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8551130 ~ 8551355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50741
CTGTTGGGTTCGTTCTGATGAGCAGATGTCATGTCTTACATGATTTTGTAAAATCAGATGTGCGTTTTGAAAATATGATCTCACATCCTGTTTTGAACTTTCACTGTCAAATTAGTTTACATGCTGTGGGGAAACATTTTcgaatataaaaagtctgtcTGATAACTTTTATGTAATAATTAGAGTTCACCAGATCTGCCAACCTTTACtcattttgcataggagc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50741 True 226 lncRNA 0.35 1 8551130 8551355

Neighbor

gene id symbol gene type direction distance location
vps37c LOC108262788,LOC108426122 coding downstream 45404 8494136 ~ 8505726 (-)
tmem132a LOC108262772 coding downstream 72111 8471530 ~ 8479019 (-)
trnam-cau_3 NA coding downstream 81988 8469071 ~ 8469142 (-)
trnam-cau_2 NA coding downstream 83023 8468036 ~ 8468107 (-)
trnam-cau_1 NA coding downstream 84075 8466984 ~ 8467055 (-)
LOC113539365 NA coding upstream 2102 8553457 ~ 8562707 (-)
LOC113539349 NA coding upstream 15206 8566561 ~ 8573850 (-)
kdm2aa LOC108262769,LOC108434796 coding upstream 30835 8582190 ~ 8604478 (-)
zgc:165520 zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222 coding upstream 53734 8605089 ~ 8610844 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding upstream 60706 8612061 ~ 8616849 (-)
G42894 NA non-coding downstream 57826 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 170415 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 251686 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 346725 8204197 ~ 8204405 (-)
G42642 NA non-coding downstream 360854 8189735 ~ 8190276 (-)
G42970 NA non-coding upstream 202796 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 216633 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 305903 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 464847 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 766073 9317428 ~ 9341922 (-)
LOC113539440 NA other downstream 58147 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 80701 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 81073 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 334579 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 961467 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 203559 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 249888 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 673521 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1448604 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1584955 10136310 ~ 10161523 (-)

Expression


Co-expression Network