G42967 (timm10,LOC107674252,LOC107746912,LOC107556822)


Basic Information

Item Value
gene id G42967
gene name timm10,LOC107674252,LOC107746912,LOC107556822
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8801243 ~ 8853794 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50809
GTCCAACTTGGTCAGAGGACGCTGGTCAGGTAGCGACAAACCCCCACGTGCGCTTGTGCCGCTCTCCTTTAACTGAAGGTTAAACGTTGCTGTCAGTTTAGTGCATTTCGTCGGAGCTCGGTGGGGTTTTAAACGGGCTGAAAATCCAAGATGGACCCCATGAAAGCGCAGCAACTGGCGGCTGAGCTCGAGGTGGAAATGATGGCAGACATGTACAACCGAATGACCAACGCATGTCACAGGAAGTGTGTTCCTCCTCACTACAAGGAAGCAGAATTGTCAAAAGGCGAAGCAGTGTGTCTGGATCGCTGCGTGGCCAAGTACCTTGACTTGCACGAGAGGCTGGGCCGTAAACTCACTGAGCTGTCCGTACAGGACGAGGAGATGATGAGGAAAGCAGCCGCTGGCACTGGATAGACCTACAAGGACTCTCAAAGAGCAACAAAGTGCGGCCTGGGGTGGACTGGAGAGGGGACAGGAAACGCACATTACGCACATATTACAGACGTCCAAACGAAGTGGAGCTGGAGTATAGTAATGTGCGTGAGAAGACACCTCACCAGTCTTCAGTTaaatctctctatctctctctccagagTATGAAGTTGTGGTTGGAGTAATAAAGTAACCCAGATTTGATTTGCCCACAGGTTGCTTGTCAAAATGCAGAATCCTTGTTGGAATTGGTAATCAGTTACTGTGACATGATTGACTTACTCATCAGTTAGTGTTTTGTCTAAAAtcccaaatgtatgtggaccaGGTTGTGCATGATGGACATTACATTTGTGTGGGTTCTCCACTGGTTCTTTaccagtggtttttttttttttcttgtttttttttcagggctCTCACAGATGACCAAAGCTTAGTTATACCTTTTAACccaaagtatgtgtgtgtgtgtgtgtgtctgtgtgtgaatcaATGAATGTGTGTCAACAAATAAGTGCTGTCTTttcagcaaaaagagaaataaatgactATCTGTGC
>TU50810
GTCCAACTTGGTCAGAGGACGCTGGTCAGGTAGCGACAAACCCCCACGTGCGCTTGTGCCGCTCTCCTTTAACTGAAGGTTAAACGTTGCTGTCAGTTTAGTGCATTTCGTCGGAGCTCGGTGGGGTTTTAAACGGGCTGAAAATCCAAGATGGACCCCATGAAAGCGCAGCAACTGGCGGCTGAGCTCGAGGTGGAAATGATGGCAGACATGTACAACCGAATGACCAACGCATGTCACAGGAAGTGTGTTCCTCCTCACTACAAGGAAGCAGAATTGTCAAAAGGCGAAGCAGTGTGTCTGGATCGCTGCGTGGCCAAGTACCTTGACTTGCACGAGAGGCTGGGCCGTAAACTCACTGAGCTGTCCGTACAGGACGAGGAGATGATGAGGAAAGCAGCCGCTGGCACTGGATAGACCTACAAGGACTCTCAAAGAGCAACAAAGTGCGGCCTGGGGTGGACTGGAGAGGGGACAGGAAACGCACATTACGCACATATTACAGACGTCCAAACGAAGTGGAGCTGGAGTATAGTAATGTGCGTGAGAAGACACCTCACCAGTCTTCAGTTaaatctctctatctctctctccagagTATGAAGTTGTGGTTGGAGTAATAAAGTAACCCAGATTTGATTTGCCCACAGGTTGCTTGTCAAAATGCAGAATCCTTGTTGGAATTGGTAATCAGTTACTGTGACATGATTGACTTACTCATCAGTTAGTGTTTTGTCTAAAAtcccaaatgtatgtggaccaGGTTGTGCATGATGGACATTACATTTGTGTGGGTTCTCCACTGGTTCTTTaccagtggtttttttttttttctcgtctttttatatttttgttaaaaacactTCATACTCACACTGTACAAACCATGTGCAAGTATGTTTTATTGTTCATGTTGGAAGACTAATATTTGCTGCATAGTATAATAAAATCTCTTA

Function

symbol description
timm10 Predicted to enable metal ion binding activity. Predicted to be involved in protein insertion into mitochondrial inner membrane. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial intermembrane space protein transporter complex. Predicted to be active in mitochondrial inner membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; optic tectum; and pectoral fin bud. Orthologous to human TIMM10 (translocase of inner mitochondrial membrane 10).

NR:

description
mitochondrial import inner membrane translocase subunit Tim10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50809 True 996 TUCP 0.46 3 8801243 8853794
TU50810 False 956 TUCP 0.46 2 8849109 8853794

Neighbor

gene id symbol gene type direction distance location
med19b med19b,LOC108412480,LOC103047628,LOC108262795,LOC107551486,LOC107730510 coding downstream 57678 8739500 ~ 8743565 (-)
ssrp1b ssrp1b,ssrp1,LOC108262778,LOC107664573,LOC107746478 coding downstream 125819 8654162 ~ 8675424 (-)
p2rx3b p2rx3,p2rx3b,LOC107674197,LOC107746906 coding downstream 155139 8638417 ~ 8646104 (-)
tmem187 tmem187 coding downstream 174854 8624566 ~ 8626389 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding downstream 184394 8612061 ~ 8616849 (-)
LOC113539142 LOC108262768 coding upstream 1826 8855620 ~ 8867270 (-)
ctnnd1 ctnnd1,LOC107746596,LOC107674216 coding upstream 14849 8868643 ~ 8893778 (-)
cabp2a cabp2,cabp2a,LOC108434781,LOC107730525,LOC107556818,LOC107746641,LOC107674218,LOC107551591,LOC107664568 coding upstream 55711 8909505 ~ 8926337 (-)
LOC113539201 LOC108262773 coding upstream 92888 8946682 ~ 8952748 (-)
pgbd5 pgbd5,LOC107552948,LOC107743535,LOC107725485 coding upstream 244193 9097987 ~ 9129058 (-)
G42987 NA non-coding downstream 32057 8767988 ~ 8769186 (-)
G42970 NA non-coding downstream 46347 8754151 ~ 8754896 (-)
G42914 NA non-coding downstream 249888 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 307939 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 420528 8380340 ~ 8380715 (-)
G42994 NA non-coding upstream 3464 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 162408 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 463634 9317428 ~ 9341922 (-)
G43270 NA non-coding upstream 528914 9382708 ~ 9412002 (-)
G43352 NA non-coding upstream 662917 9516711 ~ 9517005 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 17445 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 308260 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 330814 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 331186 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 584692 8134641 ~ 8216551 (-)
sf3b5 sf3b5 other upstream 371082 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1146165 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1282516 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 2854820 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 3157137 12010931 ~ 12021468 (-)

Expression


Co-expression Network