G42970


Basic Information

Item Value
gene id G42970
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8754151 ~ 8754896 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50814
GATGACATTTGTATCCATTTTGGGTTTTTAACCAATCAAGTGGGTGGGGAGGGAGACTTGCCTAATTTTAAATGATGGTTGCTACAACCGCTCAGTGGCTGAGTCTGTGTCTCCAGGCTAAGACAAGCCTCAGAGTCAGCCAGGTGAATCCTATGTAACACTCGGCCCATGAGATGTAGCATctgaatacacaacacacaggtGAGCACATTTTGTGGGATATATTTTCAGAGTTACCTTGTAAAGTCTGTCTGTGAGATAATGTCTGCTTTGGTTTATCAGTTCCTATTGAAGAGACTCTCTAGTGCCCTTGTCTAGCTGACCAAGTAGGGAATTTCAATGGCCAGAGAGGTGGGAAACCAGTGCACTTGGATTGGATAATGGTTGAACCAGTCAGTAAGTGACTGCTGTAGTTATGAATTATAAAAtgccttttttaatttaatttttactttttaaaaaaaatgttgtggaTATTTTGCAAGCTTTGTGTTTCAGTGATTCCTCAAAATGTTGGTGGCtttggaatgaaatgtagaTCATGTTTGTCCAAtcagatggggaaaaaaaaaaaaaaaaaaaaagagttttgacAGCCACTTCAACAGCTAGTCAATTCCATATGAGAATTAAAAAACAGGAACTATTTGATATCTGGATCAGTATGTTaattaagaaggaaaaaaggtgTACtgtatagctgtgtgtgtgagtgaatgtgtgtctgtgtgggtgagAGTGCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50814 True 746 lncRNA 0.39 1 8754151 8754896

Neighbor

gene id symbol gene type direction distance location
med19b med19b,LOC108412480,LOC103047628,LOC108262795,LOC107551486,LOC107730510 coding downstream 10586 8739500 ~ 8743565 (-)
ssrp1b ssrp1b,ssrp1,LOC108262778,LOC107664573,LOC107746478 coding downstream 78727 8654162 ~ 8675424 (-)
p2rx3b p2rx3,p2rx3b,LOC107674197,LOC107746906 coding downstream 108047 8638417 ~ 8646104 (-)
tmem187 tmem187 coding downstream 127762 8624566 ~ 8626389 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding downstream 137302 8612061 ~ 8616849 (-)
rtn4rl2a rtn4rl2,rtn4rl2a,LOC107556816,LOC107746539 coding upstream 46335 8801231 ~ 8806253 (-)
crybb1l2 crybb1l2,LOC108262797,LOC103032494,LOC108434760,LOC106941902,LOC101159514,LOC108268441,LOC107674249,LOC107551523,LOC107556820 coding upstream 68971 8823867 ~ 8830246 (-)
unc93b1 unc93b1,LOC107674251,LOC107730513,LOC107746565 coding upstream 79495 8834391 ~ 8845914 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 coding upstream 94206 8849102 ~ 8853815 (-)
LOC113539142 LOC108262768 coding upstream 100724 8855620 ~ 8867270 (-)
G42914 NA non-coding downstream 202796 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 260847 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 373436 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 454707 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 549746 8204197 ~ 8204405 (-)
G42987 NA non-coding upstream 13092 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 102362 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 261306 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 562532 9317428 ~ 9341922 (-)
G43270 NA non-coding upstream 627812 9382708 ~ 9412002 (-)
LOC113539440 NA other downstream 261168 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 283722 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 284094 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 537600 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 1164488 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 18 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 46347 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 469980 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1245063 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1381414 10136310 ~ 10161523 (-)

Expression


Co-expression Network