G42987


Basic Information

Item Value
gene id G42987
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8767988 ~ 8769186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50831
CCAAGTTGTAGattttggaaaaatatataaatggcTATAAAGAGGCCTACGATCAGAGACACAAATTGTAATACCCATAATTACCCATAACATTacccataatgcaaaCTCACTTGGCATCAGCATTTCAGCTTCCTTCTATAGCTAGTACTTTTGTCACTGGTGGTGAGTGTTGTGTGGGTAAATTGAGTTGACGTTAATGTAGTATACAATATgagtgggtgatatgacaaaaatttcTTAAAGACTTGAAGGCATTTCAAGGATACACAATATCcatcacaatatataggtttTACATAGTGCTGGGTGATTTTTCACGATTAATTTGgttaatttgatttaatgttATAACACgattttcaaaattttctaACTGAGATTGTGCATGTTTATTTCTGTgcatatttacagtttttaattaaaacatccataaatgctatttataagtttaaagcaatacaaaggaaaaacacacCCTTCTTAACTTGATAAACACCTCCTACAGCCTGCGCTACTCCCAAACACAGTACGCtcagatatataaaaaaaacaagataaacagGCAGCACTTCGCTTAGGACTGAGCTCATCGCAGAGAAAGgttcaaatatcacttcagagatatgggattggtacaggtttgaaaagtcagatgaaCAAGTTTATGTAAGATAATGCTGCATTACATCTAAGCAGTAATTCACGGGtcggaattatgtcattttcgaTCTCAGCACGTTTGACAGGTGATGTGGGGAAAATTGACGCCCCATGTTTGgattttgttagcaacaagctaggtAGCTAACTcggatgagtgatgtatattttctttcttaaacaGTGAACtatatagtcagtgttttagatttaacaaacaaatatgtctgtatgttgattaatctaaagctaatatttgtgtatattacagtataactaatttaaagataagaagttttgtttatttctgatgctgttcGTAACCATgctgatttgacgtcactccgtaaatggggaaggaactCGGACTTGAGAAGAATACCCCAAGTCGAGTTGTCAGCTGCGGTGGCATTTCATGTCACAAAAGACATGGTCCCCATTTACTCTGTTGAGAAAGAAGGGTTCACTaagttgtgcaaaaatagtaacagcaccatctatcGCAAATAgtgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50831 True 1177 lncRNA 0.35 2 8767988 8769186

Neighbor

gene id symbol gene type direction distance location
med19b med19b,LOC108412480,LOC103047628,LOC108262795,LOC107551486,LOC107730510 coding downstream 24423 8739500 ~ 8743565 (-)
ssrp1b ssrp1b,ssrp1,LOC108262778,LOC107664573,LOC107746478 coding downstream 92564 8654162 ~ 8675424 (-)
p2rx3b p2rx3,p2rx3b,LOC107674197,LOC107746906 coding downstream 121884 8638417 ~ 8646104 (-)
tmem187 tmem187 coding downstream 141599 8624566 ~ 8626389 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding downstream 151139 8612061 ~ 8616849 (-)
rtn4rl2a rtn4rl2,rtn4rl2a,LOC107556816,LOC107746539 coding upstream 32045 8801231 ~ 8806253 (-)
crybb1l2 crybb1l2,LOC108262797,LOC103032494,LOC108434760,LOC106941902,LOC101159514,LOC108268441,LOC107674249,LOC107551523,LOC107556820 coding upstream 54681 8823867 ~ 8830246 (-)
unc93b1 unc93b1,LOC107674251,LOC107730513,LOC107746565 coding upstream 65205 8834391 ~ 8845914 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 coding upstream 79916 8849102 ~ 8853815 (-)
LOC113539142 LOC108262768 coding upstream 86434 8855620 ~ 8867270 (-)
G42970 NA non-coding downstream 13092 8754151 ~ 8754896 (-)
G42914 NA non-coding downstream 216633 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 274684 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 387273 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 468544 8299180 ~ 8299444 (-)
G42994 NA non-coding upstream 88072 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 247016 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 548242 9317428 ~ 9341922 (-)
G43270 NA non-coding upstream 613522 9382708 ~ 9412002 (-)
G43352 NA non-coding upstream 747525 9516711 ~ 9517005 (-)
LOC113539440 NA other downstream 275005 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 297559 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 297931 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 551437 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 1178325 7438904 ~ 7589663 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 32057 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 455690 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1230773 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1367124 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 2939428 11708614 ~ 11708684 (-)

Expression


Co-expression Network