G42994


Basic Information

Item Value
gene id G42994
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8857258 ~ 8861508 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU50844
agagagtcggacttgcaacccgaaggtgaacctgaaggtcgtgggttcgagtctcaggtccagcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaaatGCTCCCCGGGctccgcagcaaaaaaaggctgcccactgctctgggtgtgtgttcacggtgtgcgtgtgcgcacttggatgggttaaatgcagagcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50844 True 260 lncRNA 0.58 2 8857258 8861508

Neighbor

gene id symbol gene type direction distance location
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 coding downstream 3443 8849102 ~ 8853815 (-)
unc93b1 unc93b1,LOC107674251,LOC107730513,LOC107746565 coding downstream 11344 8834391 ~ 8845914 (-)
crybb1l2 crybb1l2,LOC108262797,LOC103032494,LOC108434760,LOC106941902,LOC101159514,LOC108268441,LOC107674249,LOC107551523,LOC107556820 coding downstream 27012 8823867 ~ 8830246 (-)
rtn4rl2a rtn4rl2,rtn4rl2a,LOC107556816,LOC107746539 coding downstream 51005 8801231 ~ 8806253 (-)
med19b med19b,LOC108412480,LOC103047628,LOC108262795,LOC107551486,LOC107730510 coding downstream 113693 8739500 ~ 8743565 (-)
ctnnd1 ctnnd1,LOC107746596,LOC107674216 coding upstream 7135 8868643 ~ 8893778 (-)
cabp2a cabp2,cabp2a,LOC108434781,LOC107730525,LOC107556818,LOC107746641,LOC107674218,LOC107551591,LOC107664568 coding upstream 47997 8909505 ~ 8926337 (-)
LOC113539201 LOC108262773 coding upstream 85174 8946682 ~ 8952748 (-)
pgbd5 pgbd5,LOC107552948,LOC107743535,LOC107725485 coding upstream 236479 9097987 ~ 9129058 (-)
agt agt coding upstream 282747 9144255 ~ 9148708 (-)
G42987 NA non-coding downstream 88072 8767988 ~ 8769186 (-)
G42970 NA non-coding downstream 102362 8754151 ~ 8754896 (-)
G42914 NA non-coding downstream 305903 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 363954 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 476543 8380340 ~ 8380715 (-)
G43029 NA non-coding upstream 154694 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 455920 9317428 ~ 9341922 (-)
G43270 NA non-coding upstream 521200 9382708 ~ 9412002 (-)
G43352 NA non-coding upstream 655203 9516711 ~ 9517005 (-)
G43509 NA non-coding upstream 667008 9528516 ~ 9528727 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 3464 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 73460 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 364275 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 386829 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 387201 8469986 ~ 8470057 (-)
sf3b5 sf3b5 other upstream 363368 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1138451 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1274802 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 2847106 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 3149423 12010931 ~ 12021468 (-)

Expression


Co-expression Network