G43186


Basic Information

Item Value
gene id G43186
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9344055 ~ 9347236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51055
ATTCAATCCTATATATTCAGCTTGCATTTGCTAATTACATAGTTGACTTATTGAGAACACAAAAGACTGTGTGAGTATGTGTTAAAGTACTGCAATATGCAGAATTTGTCCAAtggttttttatttctttctgtctttaagTTGGACTTAGgggtaaatgttttaaaactatAACATGACTTTGAAACCATGATATACCAAAAACCTGGTATTGGTTTTAACTTGAAAATACCACTCCCACTCACAATAGTAGGAATGATTAAAATTCTCTTCATATTAATGagatgattggctgatgctAATAGAAAAAGTTATTCATCCTAAATCATATTATTTAGGAACTATaatgaaactaataggaaaggtaCATAGTTATGAGAATGAAGGTCTGGGACCTGTTGATGAAATTCTCTGACATTTCTGCTCTTTTTGTAGGTGTACAAATGTGAAACTTGTAGTCAAATTGAAAATACTGGTGCTTTTGCTCTGTATAAGCAGTATTTGCAGTACTGTACTTCATAAGCTACATAGCAAACCAACTTTAAGAAATAATTGTAAGTAtctgttaaaaatattatttttaagtaGGTgcttgtacactatatggccactatagtttatggacacctgaccatcacagccatatgtgggccttccccaaactgttttaGACACAAATTTGTAAgctcacaattgtatagaatgacTTTGTATATTGTGCAGAAAGTGATGTCCATGAAgtcatggtttgtcaaggttggagtggaagaactcgagtggcctgcacagagcccagACCTCAACTCCAccaaacacctttgggataaactggaatgccgacttcACACCAGGTCTTCTTATTCAATTGGCACCTAATCTTTtgtgttcttgtggctgaatgatcgcAAAtcagactgcaccccaggcctcctcacccaacatcattgcctgatctcactaatgctcttgtgactgaaatCCCCACatccacactccaaaatctaggggaaagccttcccagaagagtggcggttattataacagcaaagaggagactaactctggaatgggatgttcaaaaagcacatttaggtgtgatggtcaggtgtccaaaaacctttggccatatagtgtatatcagcATACAGGAGGGAGGATTTCCCCAAAATTGtagcatgtactgtatgtggtgtgtgGGAAATAATGGACTGCATGgcaagtgtagtgtagtgcttCTAAATCCTTCATGGAGGATCCTCATGGGCTCTCTTTTGAAAGGCAACTGAATCGGACCTATAAACGAAACCTTCTTTTTGTGAATTATGTAAAGGCTACAGTGATTTCTGATACTCTGGAGTGCATGTTAAAGTGTTCGACGTTGTCATTGTCTGTGTGGGAGGCCAAGCTATTAGCATGCACACGTTTGTTCACAATGTTCCGCTCAGCATAAAGATTAcctttaattatatttaattatattatataacatcCTAAATTGAGGTACGTTTAAGGAAGTGCATTAGTGTAACTCATCATCCACTTACTTTTTTGTTCAATCAGATTCAAATCCAGTGTCATTTTTTGCCTCTGTGGTAAAACCTACTTATTTGttgaattgttgtattgtaCGTCTATCTGAGTTTTAAATATGGGCACCAACATGCATTTTAATGCCAGATGATTTCGTCCGTTCCTCTATAACTGGCCTGTAGTATCTGTGTCTCTAATAATGGTGCAAGGAGGCAATTGCTGACTCATAGCTGTGTatgaaatctgaaaataaaacactttttttcagtGGCACTGA
>TU51058
CTGGGTATGCAATTTGAAAAGGTTATGGTcggtaatttaaaaaataaaacaaaacagtatttATACTACAGAACCAGGAGGAACTGttgtcaaataatattttttttcttcctatttAAGGCTGCTTCAGGTTTAAAGAGTCTGTGTATCTGTTTTACAGGAGTGGTCTGATGATGCCAGGAATGTTCTATATCATTTACATTGGTACATTTGTGCTGTTTAATTCAGATACAGAGGAACCATCTGTTACAGATACACAATTTGTTAGTTTTGTTATGGAGGTCATAGTGCCCAGATTTGCCAATTCCACTGACCAGAGGCATTATTACTGACTGTCCAAAGATCCGGCATGCATCACTGTATACTCGAGGTCACCCAAAAAAACTCccataatgagaaataattgGGGCAACTGAGAGATCTTTAGatgattttaacatttaaaaatgagtttCATCCCAGACGTTCTGAGTGTCTTCACATGTAGACCTGAATCTTTGCGTTCTGTTACATGGGAAGATGTGTCAGTACagataaaataatgtaaaagaaaaaacaactaTGATCAAAATGACTGCTAATTGAGTGCAAATCTAATTCTCTACATTGTCTGTGCTGTTCTACTTTTCAGCCCAAACTTCTATAGGTGAGTACCAGCAAATATGCTGTTTGAAATGTCTGTGCACTCTGGAATTACATTTTCCATCAGTGTAATTCTTAAAAATATCCAACAAGCATGTCTGTTTATTATGGCTAGAAGATTTGTGTCTAGTTTACTGACTTTCCTCACAACAACCAGGATGTAATGCCATAAAGCAGCTGCATAAACAAAACCCTGGAACAAAATAGGAAGACAGACTTAAATTTACTGACCTTTCTGCTTTTGTAGGTTTGGtaagacctttcctcctactcAAACTGCACCAGTAGCTTCCAACAAACTACATCCTGAACCAGTGTGTGTTCCATTAAATGTACACATCCTGTAGGGCTTTGGGTTGAAATGAAGTGCAGTAtcactttaaagctttaaagtcACAGATAAAAGTTTTAGAATAATTACACTGACATTTGCCTTTCAGACTTTTTGGGGAACATGTCAGATTCATTGATGGACTCTAAATGAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU51055 True 1807 lncRNA 0.38 1 9345430 9347236
TU51058 False 1127 lncRNA 0.36 1 9344055 9345181

Neighbor

gene id symbol gene type direction distance location
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding upstream 5439 9316791 ~ 9338616 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding upstream 132762 9152330 ~ 9211293 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding upstream 201025 9129979 ~ 9143030 (+)
galnt2 galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534 coding upstream 248372 9001659 ~ 9095683 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding upstream 362182 8968989 ~ 8981873 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding downstream 35402 9382638 ~ 9408518 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding downstream 73830 9421066 ~ 9487539 (+)
si:dkey-103j14.5 LOC108263510,LOC108443735 coding downstream 296573 9643809 ~ 9666593 (+)
kifbp kif1bp,LOC107676599,LOC107743600 coding downstream 392554 9739790 ~ 9745528 (+)
vps26a vps26a,LOC107666532,LOC107676600 coding downstream 416397 9763633 ~ 9772357 (+)
G43137 NA non-coding upstream 119462 9224363 ~ 9224593 (+)
G42848 NA non-coding upstream 329014 9012486 ~ 9015041 (+)
G42833 NA non-coding upstream 390029 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 473129 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 572992 8769324 ~ 8771063 (+)
G43330 NA non-coding downstream 141523 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 147741 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 179625 9526861 ~ 9527159 (+)
G43422 NA non-coding downstream 321375 9668611 ~ 9671740 (+)
G43615 NA non-coding downstream 524310 9871546 ~ 9871819 (+)
trnak-cuu NA other upstream 874174 8469624 ~ 8469881 (+)
G42685 NA other upstream 877743 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1672645 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1713915 7620545 ~ 7630140 (+)
G42075 NA other upstream 2123032 7203950 ~ 7221023 (+)
sprn sprn other downstream 1205023 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1247338 10594574 ~ 10608704 (+)
dntt dntt other downstream 1752357 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2335628 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2359699 11706935 ~ 11707005 (+)

Expression


Co-expression Network