G43330


Basic Information

Item Value
gene id G43330
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9488759 ~ 9488959 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51239
ATTCAgtctatttatttctgaatcatagaCAATGCAGAACAATTTGCATGTTATGtgtataaaactgaataaaccAAAAAATTGCTACAAACCAGagttttaatattgtaaacaaaatatactacaggttcaccatatcttaaataaattataaatttataaattctccccaaaattttgattgaataaCCATAGTGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51239 True 201 lncRNA 0.25 1 9488759 9488959

Neighbor

gene id symbol gene type direction distance location
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding upstream 1220 9421066 ~ 9487539 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding upstream 80241 9382638 ~ 9408518 (+)
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding upstream 150143 9316791 ~ 9338616 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding upstream 277466 9152330 ~ 9211293 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding upstream 345729 9129979 ~ 9143030 (+)
si:dkey-103j14.5 LOC108263510,LOC108443735 coding downstream 154850 9643809 ~ 9666593 (+)
kifbp kif1bp,LOC107676599,LOC107743600 coding downstream 250831 9739790 ~ 9745528 (+)
vps26a vps26a,LOC107666532,LOC107676600 coding downstream 274674 9763633 ~ 9772357 (+)
supv3l1 supv3l1,LOC107725491,LOC107743553,LOC107676608,LOC107666535,LOC107601833,LOC107563062 coding downstream 284973 9773932 ~ 9783035 (+)
hkdc1 hkdc1,LOC103047009,LOC106612435,LOC107743550,LOC107676583 coding downstream 295547 9784506 ~ 9795574 (+)
G43186 NA non-coding upstream 141523 9344055 ~ 9347236 (+)
G43137 NA non-coding upstream 264166 9224363 ~ 9224593 (+)
G42848 NA non-coding upstream 473718 9012486 ~ 9015041 (+)
G42833 NA non-coding upstream 534733 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 617833 8812836 ~ 8870926 (+)
G43337 NA non-coding downstream 6018 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 37902 9526861 ~ 9527159 (+)
G43422 NA non-coding downstream 179652 9668611 ~ 9671740 (+)
G43615 NA non-coding downstream 382587 9871546 ~ 9871819 (+)
G43646 NA non-coding downstream 570567 10059526 ~ 10077649 (+)
trnak-cuu NA other upstream 1018878 8469624 ~ 8469881 (+)
G42685 NA other upstream 1022447 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1817349 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1858619 7620545 ~ 7630140 (+)
G42075 NA other upstream 2267736 7203950 ~ 7221023 (+)
sprn sprn other downstream 1063300 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1105615 10594574 ~ 10608704 (+)
dntt dntt other downstream 1610634 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2193905 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2217976 11706935 ~ 11707005 (+)

Expression


Co-expression Network