G43569


Basic Information

Item Value
gene id G43569
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9759476 ~ 9760212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51505
GCAGATTTGTTTAATATAAAGTAGAAAAATGAAGGTAAGTGTAACTAAACATGACTTCACCTTTGTGACCAGTGGAAAACGCTTTTCTAATAAATCATAATCTGTTAGGATATTATGGGTATATTGCAAACAAAACATTCTACTGACATTTAGtcatgaacaaaaaacaaaactgtccATTCAGCTTACCAGAGGACATATTTGTTCtaattttctctcttctgtAAAGCAGGCTGTGTGCTAAAACTCAAAAAGCAACATAgttttctctgtgtgtcaaGAAACAGGTCATGTGAAAGAACTGTGAAGGAAGCTTGCTACAGATACTCAGCATGAAAGTGTGATAACACCACTCttacaaaagagagaaaaaacaaaacaaaacaggaagtctAAAAGAACAGCCAGTTAGTAGTGTCTGTGTCACCTAAACAGTAAGGTTGTCTTAAGGATGGCTTTTCTTCTCCAGCAGCACAAAAGAGGTCATCTGACAAATGAAAATATGATGACTTACAATTATTTGATGTGTCTACAGCTACTAAGAATGGGTCActgataaagaaaataaagaatactTTGCAAAGTGAATGCTTTGTTCACTATGCAACATTATGCACTTTGCAACATTATGCACTTTGCACTCCCACTCCTCACTTACGGAAAAGAGAAAGTGCTCACTGTTGCATTATTCGTGAGAACAACATTAGAGTCACTTAGTGATCTAtactgaaaaatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51505 True 737 lncRNA 0.35 1 9759476 9760212

Neighbor

gene id symbol gene type direction distance location
pik3ap1 pik3ap1 coding downstream 24269 9723581 ~ 9735207 (-)
LOC113544990 sorbs1,LOC108443736,LOC106576818,LOC107725459,LOC106604599,LOC102310545,LOC107601782,LOC107666363,LOC107563040 coding downstream 39558 9668721 ~ 9719918 (-)
khdrbs2 khdrbs2,LOC108443734,LOC107676606,LOC107666564,LOC107743545 coding downstream 129467 9526940 ~ 9630009 (-)
il22ra2 LOC108262818 coding downstream 300884 9409070 ~ 9458592 (-)
pcnx2 pcnx2,LOC108262757 coding downstream 379747 9350060 ~ 9379729 (-)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552 coding upstream 56076 9816288 ~ 9828253 (-)
hnrnph3 hnrnph3,LOC108438202,LOC107563056,LOC107601829 coding upstream 137025 9897237 ~ 9902912 (-)
nfkb2 nfkb2 coding upstream 184028 9944240 ~ 9959459 (-)
shld2 fam35a coding upstream 201748 9961960 ~ 9976416 (-)
zgc:193505 NA coding upstream 234409 9994621 ~ 9996645 (-)
G43509 NA non-coding downstream 230749 9528516 ~ 9528727 (-)
G43352 NA non-coding downstream 242471 9516711 ~ 9517005 (-)
G43270 NA non-coding downstream 347474 9382708 ~ 9412002 (-)
G43198 NA non-coding downstream 417554 9317428 ~ 9341922 (-)
G43029 NA non-coding downstream 741840 9016202 ~ 9017636 (-)
G43586 NA non-coding upstream 1032 9761244 ~ 9761467 (-)
G43587 NA non-coding upstream 1401 9761613 ~ 9761812 (-)
G43588 NA non-coding upstream 2085 9762297 ~ 9762556 (-)
LOC113542224 NA non-coding upstream 22453 9782665 ~ 9806230 (-)
G43722 LOC108263482 non-coding upstream 152439 9912651 ~ 9912875 (-)
sf3b5 sf3b5 other downstream 530592 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 905682 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 975678 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 1266493 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 1289047 8470358 ~ 8470429 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 239747 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 376098 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 1948402 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 2250719 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2384628 12144840 ~ 12152522 (-)

Expression


Co-expression Network