G43722 (LOC108263482)


Basic Information

Item Value
gene id G43722
gene name LOC108263482
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9912651 ~ 9912875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51675
GCTAGATGTGCATTAGTAGGCAGAGTTCTGGCAATGCGTGGCACCACAGGAGATCCAGACCATGAATGGCAGCGGGACTGTTCTCTATGCAGAGTGGCGTAACTTCTGTCAGGATGGTTGGCAGTTGCCAGCTGGTGTCTGAGCTTTGGGGAACCAAACTCTTCCAAAGCATGATGGGTAGCATTTCTTGCAATTGAGTTTAACATGGCATGCTGGAGACTGGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108263482

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51675 True 225 lncRNA 0.51 1 9912651 9912875

Neighbor

gene id symbol gene type direction distance location
hnrnph3 hnrnph3,LOC108438202,LOC107563056,LOC107601829 coding downstream 9739 9897237 ~ 9902912 (-)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552 coding downstream 84398 9816288 ~ 9828253 (-)
pik3ap1 pik3ap1 coding downstream 177444 9723581 ~ 9735207 (-)
LOC113544990 sorbs1,LOC108443736,LOC106576818,LOC107725459,LOC106604599,LOC102310545,LOC107601782,LOC107666363,LOC107563040 coding downstream 192733 9668721 ~ 9719918 (-)
khdrbs2 khdrbs2,LOC108443734,LOC107676606,LOC107666564,LOC107743545 coding downstream 282642 9526940 ~ 9630009 (-)
nfkb2 nfkb2 coding upstream 31365 9944240 ~ 9959459 (-)
shld2 fam35a coding upstream 49085 9961960 ~ 9976416 (-)
zgc:193505 NA coding upstream 81746 9994621 ~ 9996645 (-)
bmpr1aa bmpr1a,bmpr1aa,LOC108438195,LOC107666410,LOC107706029 coding upstream 122613 10035488 ~ 10072123 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding upstream 163414 10076289 ~ 10128979 (-)
LOC113542224 NA non-coding downstream 106421 9782665 ~ 9806230 (-)
G43588 NA non-coding downstream 150095 9762297 ~ 9762556 (-)
G43587 NA non-coding downstream 150839 9761613 ~ 9761812 (-)
G43586 NA non-coding downstream 151184 9761244 ~ 9761467 (-)
G43569 NA non-coding downstream 152439 9759476 ~ 9760212 (-)
G43723 NA non-coding upstream 465 9913340 ~ 9913709 (-)
G43724 LOC108263482 non-coding upstream 1710 9914585 ~ 9914978 (-)
G43725 psd,LOC108263482,LOC108438200 non-coding upstream 2316 9915191 ~ 9915802 (-)
G43726 NA non-coding upstream 3806 9916681 ~ 9916900 (-)
G43728 NA non-coding upstream 7100 9919975 ~ 9920200 (-)
sf3b5 sf3b5 other downstream 683767 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1058857 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1128853 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 1419668 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 1442222 8470358 ~ 8470429 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 87084 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 223435 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 1795739 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 2098056 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2231965 12144840 ~ 12152522 (-)

Expression


Co-expression Network