sncga (sncg,sncga,LOC108438198,LOC107601819)


Basic Information

Item Value
gene id sncga
gene name sncg,sncga,LOC108438198,LOC107601819
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9999959 ~ 10008561 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51701
ctctttctctctctccctccccctgcTCTCATCCACTCTGCTGCTCTCCTTGTTAAGGGTGTCTCAATCTGTCCGAGCTCCCAGTGCCAAGCCTGCTTTCATAAGAGCCACTCTCTTACACACTCACCCAGGACCCAACAAGcagtccaacacacacacgcacacacacgcgcacacactcagTGTGAGTGAGCAGCTATAAGACACAGCCAGCAGCAGCTGAAGGTCACTCACAGATCTACACAGCTCTCAGGATGGACGTACTGAAGAAGGGATTCTCCATGGCCAAGGAGGGAGTGGTAGCAGCGGCTGAGAAGACCAAGGAAGGGCTGGAGGAGGCCGCTGCCAAAACCAAGGAGGGGGTCATGTATGTTGGTACAAAGACAAAGGAAGGTGTGGTTTCCAGTGTGAGCACAGTTGCCCAGAAGACGACTGAGCAGGCGAATCTTGTGGGGAGGCCACGGTAGCTGGAGCCAATGAGGTATCAGGGAAGGCAGTGGAGGGTCTGGAGACTGTAGTGGCATCTGCTGGACTGGTCAACCCGGCCAAACCATCCGAAACTGAAGAAGCAGCAGAGCCAGCTCCAGATGCAGGACAAtagggtCGTTATCTCTAGGACCGATGGCTTCTTGACATGATCTGTTGGGTGTTTAAGAGGATAATAAGAGGAGAGTTCATGTTAACTGCAGTCAGTTCCCTACTGTTACTTGTGTTTTGATCCCTCCAACAGCAAAGCTTTTTAGTGTGCCTCGAAAAACACTTCCCAAATAGCATTGATATATAAATGGCTGAAGTTGGGATGAAGTAGTGGTAGTACAATAATACCTGAATGCCTTTCACCTAATGAAAATCAAGACACACATCTCACTGTCAGTTTTTCCATCGTTTGTACGGACCTTCCACTTAGCGTCTCCTCCCAGTTTCATTAGTCACGTAGAAGTTGGTTTCTACAGCTAGACCTCCAAAACGATTCTGTTGACTCCACCTGCTTTTATTACcagtttgtctttgtctttcatGAAGGCGTGTTCTGAACTTGTGAAGTACACGTAATTGTCCTCCGTCACCAAGTGCACACAGACCTACACTGTTATCTCTCCTCAATCAGCCTTATCACAACCTGCTTATGCTTTGAAGTTCTATCGTATAcacttatatataatatagaaatatatgtatacacCACTCACTTTGCTCTTGAGTCAGCTTGCACACTGGTGTATTACACCTGCTGTACTTGTAGCAGCTGAAAGGCTTCCCGAACCCATGTGTCTTACTAACCCTTTGTACTAGTGCCTAATACCTCAAAGAAGACCAGACTTTTGGTTATCAGTAGAGAGGAAGTTATAAACATCTCTGCCTTCTTTGGAATAAAAACGAATGTCCTCACCGAGTTAAGTGAGTTTCTGTGTGGCACTGAAAGCATAATGCAAGACTAGATGAATATGATGATGGAGAAAAGTGACATAATGACAAGCTCAGCTTTGGTTAACTATCTGAGAACAAGTAATGCTATTGAGATGAGGTGAGAACAATCATTACTGGCTTAAAATGCAGTTCTGGTCCAACTGGCAAATTACTAATCAGCCTGCTTCGGCAACCCTTTCTTAATTATCCTAGTTCTtgttatgtaaagctgctttgtgacaatgtccattgttaaaagcactatacaaataaaattgaattgaaaattgaattgaattgtggaAACAGtgctgaaatattaaaaatggaagCACTGTTTTGCAGAAGCTATGCATGTTGCCTTAAACACAACTCACTAACTGATTATAACTGTGGTGCACTCTCTGCAAATTATTTTCCAgtcacttgatttttttcattttctaaatgAATTCAGCACCTGAAATAAATGTTTGGTTAAAAACTAAAATGCCTAC
>TU51702
CTCTTACACACTCACCCAGGACCCAACAAGcagtccaacacacacacgcacacacacgcgcacacactcagTGTGAGTGAGCAGCTATAAGACACAGCCAGCAGCAGCTGAAGGTCACTCACAGATCTACACAGCTCTCAGGATGGACGTACTGAAGAAGGGATTCTCCATGGCCAAGGAGGGAGTGGTAGCAGCGGCTGAGAAGACCAAGGAAGGGCTGGAGGAGGCCGCTGCCAAAACCAAGGAGGGGGTCATGTATGTTGGTACAAAGACAAAGGAAGGTGTGGTTTCCAGTGTGAGCACAGTTGCCCAGAAGACGACTGAGCAGGCGAATCTTGTGGGGAGGCCACGGTAGCTGGAGCCAATGAGGTATCAGGGAAGGCAGTGGAGGGTCTGGAGACTGTAGTGGCATCTGCTGGACTGGTCAACCCGGCCAAACCATCCGAAACTGAAGAAGCAGCAGAGCCAGCTCCAGATGCAGGACAAtagggtCGTTATCTCTAGGACCGATGGCTTCTTGACATGATCTGTTGGGTGTTTAAGAGGATAATAAGAGGAGAGTTCATGTTAACTGCAGTCAGTTCCCTACTGTTACTTGTGTTTTGATCCCTCCAACAGCAAAGCTTTTTAGTGTGCCTCGAAAAACACTTCCCAAATAGCATTGATATATAAATGGCTGAAGTTGGGATGAAGTAGTGGTAGTACAATAATACCTGAATGCCTTTCACCTAATGAAAATCAAGACACACATCTCACTGTCAGTTTTTCCATCGTTTGTACGGACCTTCCACTTAGCGTCTCCTCCCAGTTTCATTAGTCACGTAGAAGTTGGTTTCTACAGCTAGACCTCCAAAACGATTCTGTTGACTCCACCTGCTTTTATTACcagtttgtctttgtctttcatGAAGGCGTGTTCTGAACTTGTGAAGTACACGTAATTGTCCTCCGTCACCAAGTGCACACAGACCTACACTGTTATCTCTCCTCAATCAGCCTTATCACAACCTGCTTATGCTTTGAAGTTCTATCGTATAcacttatatataatatagaaatatatgtatacacCACTCACTTTGCTCTTGAGTCAGCTTGCACACTGGTGTATTACACCTGCTGTACTTGTAGCAGCTGAAAGGCTTCCCGAACCCATGTGTCTTACTAACCCTTTGTACTAGTGCCTAATACCTCAAAGAAGACCAGACTTTTGGTTATCAGTAGAGAGGAAGTTATAAACATCTCTGCCTTCTTTGGAATAAAAACGAATGTCCTCACCGAGTTAAGTGAGTTTCTGTGTGGCACTGAAAGCATAATGCAAGACTAGATGAATATGATGATGGAGAAAAGTGACATAATGACAAGCTCAGCTTTGGTTAACTATCTGAGAACAAGTAATGCTATTGAGATGAGGTGAGAACAATCATTACTGGCTTAAAATGCAGTTCTGGTCCAACTGGCAAATTACTAATCAGCCTGCTTCGGCAACCCTTTCTTAATTATCCTAGTTCTtgttatgtaaagctgctttgtgacaatgtccattgttaaaagcactatacaaataaaattgaattgaaaattgaattgaattgtggaAACAGtgctgaaatattaaaaatggaagCACTGTTTTGCAGAAGCTATGCATGTTGCCTTAAACACAACTCACTAACTGATTATAACTGTGGTGCACTCTCTGCAAATTATTTTCCAgtcacttgatttttttcattttctaaatgAATTCAGCACCTGAAATAAATGTTTGGTTAAAAACTAAAATGCCTACCAGTATTGTATTTCCTTATAAATAA
>XM_026944892.2
TCTCATCCACTCTGCTGCTCTCCTTGTTAAGGGTGTCTCAATCTGTCCGAGCTCCCAGTGCCAAGCCTGCTTTCATAAGAGCCACTCTCTTACACACTCACCCAGGACCCAACAAGcagtccaacacacacacgcacacacacgcgcacacactcagTGTGAGTGAGCAGCTATAAGACACAGCCAGCAGCAGCTGAAGGTCACTCACAGATCTACACAGCTCTCAGGATGGACGTACTGAAGAAGGGATTCTCCATGGCCAAGGAGGGAGTGGTAGCAGCGGCTGAGAAGACCAAGGAAGGGCTGGAGGAGGCCGCTGCCAAAACCAAGGAGGGGGTCATGTATGTTGGTACAAAGACAAAGGAAGGTGTGGTTTCCAGTGTGAGCACAGTTGCCCAGAAGACGACTGAGCAGGCGAATCGTGGGGAGGCCACGGTAGCTGGAGCCAATGAGGTATCAGGGAAGGCAGTGGAGGGTCTGGAGACTGTAGTGGCATCTGCTGGACTGGTCAACCCGAATGAACAACTGATCACTGAGGCCAAACCATCCGAAACTGAAGAAGCAGCAGAGCCAGCTCCAGATGCAGGACAAtagggtCGTTATCTCTAGGACCGATGGCTTCTTGACATGATCTGTTGGGTGTTTAAGAGGATAATAAGAGGAGAGTTCATGTTAACTGCAGTCAGTTCCCTACTGTTACTTGTGTTTTGATCCCTCCAACAGCAAAGCTTTTTAGTGTGCCTCGAAAAACACTTCCCAAATAGCATTGATATATAAATGGCTGAAGTTGGGATGAAGTAGTGGTAGTACAATAATACCTGAATGCCTTTCACCTAATGAAAATCAAGACACACATCTCACTGTCAGTTTTTCCATCGTTTGTACGGACCTTCCACTTAGCGTCTCCTCCCAGTTTCATTAGTCACGTAGAAGTTGGTTTCTACAGCTAGACCTCCAAAACGATTCTGTTGACTCCACCTGCTTTTATTACcagtttgtctttgtctttcatGAAGGCGTGTTCTGAACTTGTGAAGTACACGTAATTGTCCTCCGTCACCAAGTGCACACAGACCTACACTGTTATCTCTCCTCAATCAGCCTTATCACAACCTGCTTATGCTTTGAAGTTCTATCGTATAcacttatatataatatagaaatatatgtatacacCACTCACTTTGCTCTTGAGTCAGCTTGCACACTGGTGTATTACACCTGCTGTACTTGTAGCAGCTGAAAGGCTTCCCGAACCCATGTGTCTTACTAACCCTTTGTACTAGTGCCTAATACCTCAAAGAAGACCAGACTTTTGGTTATCAGTAGAGAGGAAGTTATAAACATCTCTGCCTTCTTTGGAATAAAAACGAATGTCCTCACCGAGTTAAGTGAGTTTCTGTGTGGCACTGAAAGCATAATGCAAGACTAGATGAATATGATGATGGAGAAAAGTGACATAATGACAAGCTCAGCTTTGGTTAACTATCTGAGAACAAGTAATGCTATTGAGATGAGGTGAGAACAATCATTACTGGCTTAAAATGCAGTTCTGGTCCAACTGGCAAATTACTAATCAGCCTGCTTCGGCAACCCTTTCTTAATTATCCTAGTTCTtgttatgtaaagctgctttgtgacaatgtccattgttaaaagcactatacaaataaaattgaattgaaaattgaattgaattgtggaAACAGtgctgaaatattaaaaatggaagCACTGTTTTGCAGAAGCTATGCATGTTGCCTTAAACACAACTCACTAACTGATTATAACTGTGGTGCACTCTCTGCAAATTATTTTCCAgtcacttgatttttttcattttctaaatgAATTCAGCACCTGAAATAAATGTTTGGTTAAAAACTAAAA

Function

symbol description
sncga Predicted to enable cuprous ion binding activity. Predicted to be involved in several processes, including chemical synaptic transmission; regulation of neuron death; and synaptic vesicle endocytosis. Predicted to be active in axon terminus; cytoplasm; and neuronal cell body. Is expressed in brain; cranial ganglion; kidney; notochord; and testis. Human ortholog(s) of this gene implicated in Lewy body dementia. Orthologous to human SNCG (synuclein gamma).
sncg Predicted to enable cuprous ion binding activity. Predicted to be involved in several processes, including chemical synaptic transmission; regulation of neuron death; and synaptic vesicle endocytosis. Predicted to act upstream of or within adult locomotory behavior; regulation of dopamine secretion; and regulation of neurotransmitter secretion. Located in centrosome and cytoplasm. Implicated in Lewy body dementia. Biomarker of several diseases, including Lewy body dementia; neurodegenerative disease (multiple); pancreatic cancer; retinoblastoma; and vascular dementia.

NR:

description
PREDICTED: synuclein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51701 True 1904 lncRNA 0.44 5 9999984 10008561
TU51702 False 1817 lncRNA 0.43 5 9999959 10008449
XM_026944892.2 False 1890 mRNA 0.43 7 9999991 10008535

Neighbor

gene id symbol gene type direction distance location
zgc:193505 NA coding downstream 3314 9994621 ~ 9996645 (-)
shld2 fam35a coding downstream 23543 9961960 ~ 9976416 (-)
nfkb2 nfkb2 coding downstream 40500 9944240 ~ 9959459 (-)
hnrnph3 hnrnph3,LOC108438202,LOC107563056,LOC107601829 coding downstream 97047 9897237 ~ 9902912 (-)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552 coding downstream 171706 9816288 ~ 9828253 (-)
bmpr1aa bmpr1a,bmpr1aa,LOC108438195,LOC107666410,LOC107706029 coding upstream 26927 10035488 ~ 10072123 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding upstream 67728 10076289 ~ 10128979 (-)
usp54a usp54,usp54a,LOC106606172,LOC106576704,LOC107582762,LOC107698809 coding upstream 157157 10165718 ~ 10233081 (-)
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding upstream 226196 10234757 ~ 10240783 (-)
synpo2la synpo2l coding upstream 235595 10244156 ~ 10253087 (-)
G43728 NA non-coding downstream 79759 9919975 ~ 9920200 (-)
G43726 NA non-coding downstream 83059 9916681 ~ 9916900 (-)
G43725 psd,LOC108263482,LOC108438200 non-coding downstream 84157 9915191 ~ 9915802 (-)
G43724 LOC108263482 non-coding downstream 84981 9914585 ~ 9914978 (-)
G43723 NA non-coding downstream 86250 9913340 ~ 9913709 (-)
G43775 NA non-coding upstream 7857 10016418 ~ 10017028 (-)
G43752 NA non-coding upstream 13006 10021567 ~ 10024042 (-)
G43779 NA non-coding upstream 17708 10026269 ~ 10026469 (-)
G43781 NA non-coding upstream 19043 10027604 ~ 10027815 (-)
G43782 NA non-coding upstream 19850 10028411 ~ 10029209 (-)
sf3b5 sf3b5 other downstream 771075 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1146165 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1216161 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 1506976 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 1529530 8470358 ~ 8470429 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 127749 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 1700053 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 2002370 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2136279 12144840 ~ 12152522 (-)
nin nin other upstream 2426548 12435109 ~ 12465063 (-)

Expression


Co-expression Network