G43749


Basic Information

Item Value
gene id G43749
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10030568 ~ 10032075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51707
AAAATTCGCTGTGCTTTATTTCTTACCTGCCGTTTCAAGTGATGTATCCCGCTTGCTGCGCTGTGCACCTCTTGTATCTGCTCTCTCCTTATGCTTCTTTCTTTGAAGTTTggattcttttttcttcattaatgcAGACAATTTTTCCAAATCTACTTTCACTTCAGACTCTGTTAGACCTCCAGTATTACTGAAAACGCTGTTGAAAATCGTGAGATGATCGTCAAGGCTCTTGCGCACATGTGTCAACTCGGCTTGCAGTTTTCCCTCTACATCTCTGGAAGCGGCACCTTTGGTACAGTCGCAGCAGGATGGACATTGCTGTTCTCCAAGTTTGACGACACGTGCTTGAAGCTGTTCCACTGTTTTTTCCAAAGCAAAGAAGTCTTTATAAGCTCTAGAGTCCTCTGAGAAATGGTCAAATTTCTGTTCCTTTTGTCTCCTTTTGAGATCCTCTGCCAGCTCCATTGGTTCATCTGCAGTGGGATCTTCAGAGTTAAGCATGGAGGCCAGGCTTCGGCTGTGTCCGTTAATCTGTTCCTGCAGGTCGCTGATCAGCATCTTCAGCACAGGGATGGAGTAGGTTTTCTGGTCTTGTGGGGACCAGTCCATAAACTCCAAAACCTCTTCACCAAGGAGGATTTCCAGTACATCAGTATGACGTATGGCATCTTTCAACAGAGAGCTGAAAAGAGTTGAACAGGCGTTTTATCTCGCCAGATTTCTGACTGTCCTTTTGCTGTAGAGCTTCAACATCTTTTTGACTGCCTGAAAGTGAGGTCTGGAGTATGGTTAAGTTTTGTTGCAGTGTTCTGCGCTTCTCTTGCTCAAGCGCCAGTGAGTTCTGCACAGTGTGTAAGCCTAATTTTATCTCTTCCACTGGTGGGCCCCATCCATCATTTTCCCAAATGTTTAACCTCTCTTCTGCTGCACTGTCTAGAGCGAGCCTGTTTTCATTTGCAATCACTGTTATATTAGATACTGCCTGTTTCAACTGCGCCACAGTTGTGCTAAGGCCAGTACAGTCACAATTTCTGCTACCGGAGCTCATGTTCTTATAGAACTGTGTGTACAAATAGTCCGTATCTATCTCCAGGTCCTGGACTGTGCTTTGGAGAATGGAGACATTTTTTGACAGGTCATCAGCATATTTTCCAACTGCCTCCTTTGCCGCATCCACTTCTAGGAAAGCCTCAATGTATCTGTCCTCATTCTTGCGGTCATTCTGGATTACACGCTCCTCTAAGGTCTTCCAGCCCTTTTGCAAGTGTTCTATTTTTTCTGACACTTGGACTTGGTGTTTGTTTAGGGCACTGAACTGTATAGTGTTATTGACCACCTTATTGTCCAGACGGGTAATGGCTTCCCAGACTGCTGTGTCATCTTGAGGCTGTCTACCAGGACTTGGTGTCTGACTTGCAAGTGTCAAAACTCTCTGGATCTCCTCCTCTAACTGCTCTTGTTTCTCTCTTGCCTCTGATAGTGAGGAATTTAGGGAATGGAGACTC

Function

NR:

description
PREDICTED: (E3-independent) E2 ubiquitin-conjugating enzyme

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51707 True 1508 lncRNA 0.45 1 10030568 10032075

Neighbor

gene id symbol gene type direction distance location
zgc:193505 NA coding downstream 33923 9994621 ~ 9996645 (-)
shld2 fam35a coding downstream 54152 9961960 ~ 9976416 (-)
nfkb2 nfkb2 coding downstream 71109 9944240 ~ 9959459 (-)
hnrnph3 hnrnph3,LOC108438202,LOC107563056,LOC107601829 coding downstream 127656 9897237 ~ 9902912 (-)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552 coding downstream 202315 9816288 ~ 9828253 (-)
bmpr1aa bmpr1a,bmpr1aa,LOC108438195,LOC107666410,LOC107706029 coding upstream 3413 10035488 ~ 10072123 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding upstream 44214 10076289 ~ 10128979 (-)
usp54a usp54,usp54a,LOC106606172,LOC106576704,LOC107582762,LOC107698809 coding upstream 133643 10165718 ~ 10233081 (-)
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding upstream 202682 10234757 ~ 10240783 (-)
synpo2la synpo2l coding upstream 212081 10244156 ~ 10253087 (-)
G43782 NA non-coding downstream 1359 10028411 ~ 10029209 (-)
G43781 NA non-coding downstream 2753 10027604 ~ 10027815 (-)
G43779 NA non-coding downstream 4099 10026269 ~ 10026469 (-)
G43752 NA non-coding downstream 6526 10021567 ~ 10024042 (-)
G43775 NA non-coding downstream 13540 10016418 ~ 10017028 (-)
G43787 NA non-coding upstream 83860 10115935 ~ 10116716 (-)
G43790 NA non-coding upstream 95339 10127414 ~ 10127631 (-)
G43910 NA non-coding upstream 209866 10241941 ~ 10242882 (-)
G43978 NA non-coding upstream 221649 10253724 ~ 10253938 (-)
G43981 NA non-coding upstream 233281 10265356 ~ 10265588 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 22007 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 801684 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1176774 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1246770 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 1537585 8483303 ~ 8492983 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 104235 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 1676539 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1978856 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2112765 12144840 ~ 12152522 (-)
nin nin other upstream 2403034 12435109 ~ 12465063 (-)

Expression


Co-expression Network