G43905 (synpo2l)


Basic Information

Item Value
gene id G43905
gene name synpo2l
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10242057 ~ 10247035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51883
AGTCCACTATCACTGCAGCATACATgtctatgcacacacacacgcacacccattTACCCAAGATTCTACTTATCAAATATTATAGCATATACCAACAATCTAATCCTCACCACAGTCTACTACAATTAATCTGCTGAACATTCATGAAACTGGCAAACGTTTGtgcaattaattattataaagatTTACGTGCATAGTTTACAGAAGAGTGCATAAATCAATAGAGGCAGTAAATAAACACAAGCTCATTGTGTGACATTCAAAACTGTATCTAATTTGTTGTATGGTAAGTCTATTAAAAGTTAAATATGCCTTGAAGAACATATAATGTTTATCCATAGTATCTCATcgtttattttattctcttagCATCTCATACATTCAGTAGTATAATATGCTCCTGTAATGAGTTCCTGTACTACCTGCTACTTTTTCCTTCAGTGCTGCCTTGATAACCCTAACACATCATCTTCGCTTTCTGCTTTCCTTTCTCTCACTAGTGGCTTTGGGAGCTCACACTCAGATATCACTTCAAGTTACAATCAAGTAGCTGGGAATTTATCATCATCTCAAAGCACCCAAATACAACATGACTGGCAATAAGAACCTTAATTCTAATTCCAGTGATCTAGTTAATATCCATTTAAAGTCCTGTAGAGTGGTCACTACACATGCCTGGTGTGACTGCACATATAAGAACACAGAACTAGTTGGAAGGCTCGGTCTTCAAACCCATCCCTTGGACTGTCTTGCCCACATAACCTTTAACACTGCTAGTTTAAACTCTCACACctccatgttaaataaatgaattaattaaattttatttgtttattagaaTGTGAGTGAGACATAAGTGCCAGAGCCCATTTGGATGATGTTGGTTTGCTGTTTACGTTGCTCCCACAAATAGGCTGTGACACTCATGCACCTGTTCCTTCCAGGGTCTGCCAGGACAGATATAATTTCTGATTGGTTTATGAGAAGCAGGGATCCAGCTTACCTTATTCCTTTAGCCAGCGCCTTGCTGtcccatttcattttcaaacattaataaagtttatagGTCCCAGCAAAAAGACCCAACAGATAGTTGGTAGAAAGTTTACAGTAGAAAGtttacagtcaactccagaatatTTGGCACCGTTcatgataattatataaaatgaagtACACAGTGACtgatatttttagttttaacatATCAGTGTGCTGTATAGTTTCAACACTGCACTGCTAGCTATACAGTAAAATAGCCTGACATCAATAATACACCATTGTATTTAATAGTGGGTATAAGggcttttcagtgttttcattgtGATCCCCTTTCTTTCTGTTAATAACAGTGCTAATTTTTAGAGAAAGGTAAGCATTTTCTCCAAGTGTtagtacaaaatgtaaataatagtgtaaaatattaattttatatagtAGTTCACCTATTCTATTAATGGGTGCCAATAATAATAGATTTGACTGTGAGTAGcttttaaaatgtgcaatttAATATAGTCTACCGTCAAACATCTCAAATCCCAATGATATTTCTTTATGGTCAGATCAATCAATTCTCCACTGTGGTGTTCTTTTTCAGTACCTTAACTGCAATTCATCTAAGACTCAGTAAGGAGTTTGTTGTGTTTCCCTAATAAGCTTTTTCTGCTCTGCTCAAAACACTGCTGAAATTTCTGAAAGATTATCTTACATGAGCTACAGTGTAGAGCACATCTTCATTATGAGATGCATTTTGAAAGGCTAAAAATACTGTGATGTAGTGACTTGGATATAGCCAGCTTTATAGGTACTACGATGAGTGTCTTTAGGTTTTGTACCTGAGTACCAAACAAAGGATGATAATTAAATAGAGCATTGTGTACATTGCTTATAATGGTACAATAAATTCAGTATCAGACTACAATTCTGAATTCTCAAATGTAAGTGCTTTTAAACAAGTCATGTTCATAACTAAATATACTTTATGGCCAAtgttttgtggacacctgaccatcacactcatatgtgcttgttgaacatcccattatagatttagtccccattttgctgttataataacctccactcttctgggacggttttccactagattttggagcctGGATGTGggaatttgcccattcagccacaagagcattagtgaggtcaggcattacTGTCAggcaagaaggcctggggcacagtcaatTTTTGCCACAATTATTAAAGTTTTGTCTGTTTCATGTTGCTCCAAATAAACCAATACAATTGTTGTTGCTCTTCTTTGCCCAGTATTTGTATCTGAACTGTTGTTTGTATGAATGACGATAAGGATTGAGCTCATCCTTTCTTTAATGTCACACTCATTTCTACAGAGCTCCAGGCCTCCAGACATGAGGCTGTATGCCCATCCGTGTAGCAATAAAGCGTGGCTTGGGTGCCTGGACTGTAGGCTTCAGGGGGACTGGTGGCAGGGAGCTAAGCTCAGGAGCACTCTTGAACTGTTTGGTAGCCTGGAGACCATGGCAACCTATGCTTGACACGCTGGATAGAGAATCTGGGGGTGAGTATGGAGTAGGAAGAAATATGGGAGTGGCAGAGATTTTAGGGAGGTCTGGCAAACCTGGAGCTCGTGCAGACATGGCTGTATTTACAGGTACAGGCTGAGGTGGAGGGGAAGCAGTGGCTGGGGTAGGGGAGGTCATGTCAGAATGAAACAGGGGTTCAGCCAGAGTGGTTTGTGCACGTGGAGCAATCACTGTGGGGCTTATCGTTGGAGCTGACATAGGAGTAGGAGTAGAGAAGCGTTTGATCTCATACACACGTGCTGCCTTCACGGGTACCTGCCTGGGTTGGGTTAAGGTGTGACCCACCTGTGGCTGCCTCTGGTATGAGGGACCTAAGGACTGTTTGCTTGAGTCACCTCCAAACCTGAACATGGCTGAGTTGAGTTGATAAGGCTGCCGCCTTATGAAGTCTATAGCCTTGATACCTTCCTTCTGGAATCCATGACCACTCTTACCCACCTTGGAGCTTCTTTCAGAAGCCTTTGCTCCTCCACGCTGTAATCCCAGGGGACAAGAAGGGGACAGGAGAGGGTTGTACCCAATGGGTGGGGGAGCACGGACATTTGGAGAGTACTTCCAAGGTGAAGACTCACATGGATGGATCATGGCCATAGCAGACTGGGGCTGTGtatactgctgctgctgctgctgctgctgctgctgagtgtgtgatggaggagaATCTATCACAAAGAGATCTCTGCGATTCTGTCTTCTTGCAAATAGCTCAGCACCTTTACCCTCTGCCTGTGGAATCTGAGACATCTCTGGGATGATGCGTGGTTTAGGAGCCACTGGTGGTGCGAGCCGTCCCCTTCTGTCATCAAAGTTGTATGAATCCTGAGTGACAGAGACAGGCTCTGTGTATGCTTGCTTATGCCTCTCATCCAAATTCTGCACCAAAGACAGCAGCTCAGGATTGGGTGAGTTTTTCTTGCTGTCAAACACCTTGAACATTGGCTTACTGGCACTACGGCGACGAGCCTCCTGAAGGATGCCAGTTTTCCCACCAGCTGCAGGAGCTATCTCTGTGGTTTTCTCTTGATACACTACAGGAGATAGAGGAGTCATTGAGCCAACAGGACTTGCAGGAACTGCAGAAGTCATGGGGGCATCAGGTATCATTGAAGACTCAGGAGCTGTGAATTGAGAGGATGCAATGGAGGCTATGGTAGTGGGATCTGTGAGACTAGCAGGAGGAGTAGCTGTAATGCCACTGGCAGGAATAGAGGAATCCGGCACTATAGTCTGTGGGATAGAAGGCTGAATATTCTCCATTGATGAAGGAGGATGTGGAGTAAGGGAGGCTGCAGGATCTGCTATAGCAGAGTATGAGAGAGGGTCAGTGGGCACAGAGACTAATATGGAGGACACCTCAGCAGGAACAATAGCACTCATCTGGCTCACTGTGAAACTGGCAGAAGGTACATCtataaccttctgatcagatgGTGTTGAGAAAGGAGGGGCCACCACTGCCACTGAGACTGGTCTGGGAGTCTTTTTAGCAGTGGTAGGGTGAAACATGACTGGTGCTGTAGCTGCTCTGTGGCTGATGAAACCGGGGGCAAATGGACGAGCTGTGCGGTTCAACACCGAGCTAGCTGGCAACTCAGGCAGAGGAGCTGTTGGTGGAGGCATCTTAGCCAATGCAGCAGTTATTGGTTGGTTTGTTACAGGCACCAGGCTATGGACTGGTACTGGTATGCTGGCAGTATGCTCATTAACAGTGAAAGGGATTACTTGAGGTGGGAATCCTGTGATTTGTGTCTTGGAAGCACAAGCTTCCTCTTGCATCAACAGCTCTGGTGGTTTGGTGGGCTTTGGTGCAACTGGTGGTGGCTGGACACTGAGTTTCACTTGTTTTTTTACCTGTACAGACAAATTTGATGGTTGTGTCTGTATTCCTTGTGTTTGAATTTCAGGCTGGGATTGGCTCTGCATCAGACTCGGTTGTGCCTGAGCAATAGAAATCTTCTTGGCATGCTCCTTAGCTCTCTTCCTCTGCTGCTCAAACAATTTTGCCCCCTTCCCTGTGGTGTCACTCAGGCCAGTGCTCAGAGAATCCTCTGCTTCATTTTCTTCCAAGCCTCTAGATGCTGATCTCTTCTCTAGAATATCCAGATAGCCACTGTCCCATGTGGGATCAGGTGCTGCACTGAACTCCTCCTCATCCACCTCAGATTCACTTCCAAGGAAGTGGCTGTCCTCCTCTTGAGAGTCTTGTTGCATGTCCTCATCTACACTACCGTAACTGGTCAATGTGTACTTCTTGGAGCGCTGACGGCGTTTTTTGAACATCAGAACACCCTTGGAGTGGGGGTTAGGTGCGTCAGTCAGCAGAGAGGCAATGGTGCGACACTTTTTCCGGGCCTCCTTCACCTGCTTGTCTTGCGGTGTCTCACCACGGTT

Function

symbol description
synpo2l Predicted to enable actin binding activity. Predicted to be involved in several processes, including positive regulation of Rho protein signal transduction; positive regulation of stress fiber assembly; and sarcomere organization. Located in cell junction; cytosol; and nuclear speck.

NR:

description
PREDICTED: synaptopodin 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51883 True 4979 lncRNA 0.44 1 10242057 10247035

Neighbor

gene id symbol gene type direction distance location
mmrn2a NA coding upstream 206667 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 247667 9976131 ~ 9994390 (+)
psda LOC108263482,LOC108438200 coding upstream 298069 9909353 ~ 9943988 (+)
LOC117596887 NA coding upstream 335664 9904065 ~ 9906393 (+)
rufy2 rufy2,LOC107725492,LOC106612408 coding upstream 345263 9876707 ~ 9896794 (+)
si:dkey-191g9.5 LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575 coding downstream 281342 10528377 ~ 10540040 (+)
si:dkey-191g9.7 LOC108263628 coding downstream 295575 10542610 ~ 10550191 (+)
dna2 dna2,LOC107743557,LOC108261390 coding downstream 326117 10573152 ~ 10588115 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding downstream 437465 10684500 ~ 10723757 (+)
nanp nanp coding downstream 536071 10783106 ~ 10785648 (+)
LOC117596896 NA non-coding upstream 78101 10161499 ~ 10163956 (+)
G43663 NA non-coding upstream 140526 10093735 ~ 10101531 (+)
G43646 NA non-coding upstream 164408 10059526 ~ 10077649 (+)
G43651 NA non-coding upstream 169959 10071167 ~ 10072098 (+)
G43615 NA non-coding upstream 370238 9871546 ~ 9871819 (+)
LOC117596582 NA non-coding downstream 71386 10318421 ~ 10323264 (+)
G44016 NA non-coding downstream 267302 10514337 ~ 10516886 (+)
G44044 NA non-coding downstream 311594 10558629 ~ 10560523 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding downstream 364444 10611479 ~ 10611806 (+)
G44060 opn3 non-coding downstream 368111 10615146 ~ 10615586 (+)
trnak-cuu NA other upstream 1772176 8469624 ~ 8469881 (+)
G42685 NA other upstream 1775745 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2570647 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 2611917 7620545 ~ 7630140 (+)
G42075 NA other upstream 3021034 7203950 ~ 7221023 (+)
sprn sprn other downstream 305224 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 347539 10594574 ~ 10608704 (+)
dntt dntt other downstream 852558 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1435829 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1459900 11706935 ~ 11707005 (+)

Expression


Co-expression Network