G43910


Basic Information

Item Value
gene id G43910
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10241941 ~ 10242882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU51888
taaaatttaattaattcatttatttaacatggagGTGTGAGAGTTTAAACTAGCAGTGTTAAAGGTTATGTGGGCAAGACAGTCCAAGGGATGGGTTTGAAGACCGAGCCTTCCAACTAGTTCTGTGTTCTTATATGTGCAGTCACACCAGGCATGTGTAGTGACCACTCTACAGGACTTTAAATGGATATTAACTAGATCACTGGAATTAGAATTAAGGTTCTTATTGCCAGTCATGTTGTATTTGGGTGCTTTGAGATGATGATAAATTCCCAGCTACTTGATTGTAACTTGAAGTGATATCTGAGTGTGAGCTCCCAAAGCCACTAGTGAGAGAAAGGAAAGCAGAAAGCGAAGATGATGTGTTAGGGTTATCAAGGCAGCACTGAAGGAAAAAGTAGCAGGTAGTACAGGAACTCATTACAGGAGCATATTATACTACTGAATGTATGAGATGctaagagaataaaataaacgATGAGATACTATGGATAAACATTATATGTTCTTCAAGGCATATTTAACTTTTAATAGACTTACCATACAACAAATTAGATACAGTTTTGAATGTCACACAATGAGCTTGTGTTTATTTACTGCCTCTATTGATTTATGCACTCTTCTGTAAACTATGCACGTAAatctttataataattaattgcaCAAACGTTTGCCAGTTTCATGAATGTTCAGCAGATTAATTGTAGTAGACTGTGGTGAGGATTAGATTGTTGGTATATGCTATAATATTTGATAAGTAGAATCTTGGGTAaatgggtgtgcgtgtgtgtgtgcatagacATGTATGCTGCAGTGATAGTGGACTGAATGACTTTTGATGAAAAGATGTATttttcaagaaataaaaataaacttcagtGCTTCTCAGTGACTCTAATTTGTTACACCACATTGACCCCTAGCCTCAGCTTTGGTATTACA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

RNA

RNA id representative length rna type GC content exon number start site end site
TU51888 True 942 lncRNA 0.36 1 10241941 10242882

Neighbor

gene id symbol gene type direction distance location
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding downstream 1158 10234757 ~ 10240783 (-)
usp54a usp54,usp54a,LOC106606172,LOC106576704,LOC107582762,LOC107698809 coding downstream 8860 10165718 ~ 10233081 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding downstream 112962 10076289 ~ 10128979 (-)
bmpr1aa bmpr1a,bmpr1aa,LOC108438195,LOC107666410,LOC107706029 coding downstream 169818 10035488 ~ 10072123 (-)
zgc:193505 NA coding downstream 245296 9994621 ~ 9996645 (-)
synpo2la synpo2l coding upstream 1274 10244156 ~ 10253087 (-)
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding upstream 12743 10255625 ~ 10318195 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding upstream 80434 10323316 ~ 10330221 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding upstream 88851 10331733 ~ 10447727 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding upstream 206437 10449319 ~ 10488807 (-)
G43790 NA non-coding downstream 114310 10127414 ~ 10127631 (-)
G43787 NA non-coding downstream 125225 10115935 ~ 10116716 (-)
G43749 NA non-coding downstream 209866 10030568 ~ 10032075 (-)
G43782 NA non-coding downstream 212732 10028411 ~ 10029209 (-)
G43781 NA non-coding downstream 214126 10027604 ~ 10027815 (-)
G43978 NA non-coding upstream 10842 10253724 ~ 10253938 (-)
G43981 NA non-coding upstream 22474 10265356 ~ 10265588 (-)
G43982 NA non-coding upstream 48185 10291067 ~ 10305082 (-)
G43987 NA non-coding upstream 72843 10315725 ~ 10316448 (-)
G44103 NA non-coding upstream 410832 10653714 ~ 10655844 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 80418 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 233380 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1013057 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1388147 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1458143 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1465732 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1768049 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1901958 12144840 ~ 12152522 (-)
nin nin other upstream 2192227 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2281754 12524636 ~ 12534215 (-)

Expression


Co-expression Network