G43978



Basic Information


Item Value
gene id G43978
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10253724 ~ 10253938 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU51966
CGCAAGTCAAAGTGCAATTCATGACCTCTCCTGCTCATCTTTAAAGACCATGCACGCTGATACTGCTCTCTGTACTCAGGTGGGCCGCCCTCATGCTCTCTATTGAAGATACTGCTTAAACGGCacaacatcttaaacataaaactcagcacaaggAGTTCACTGCTAGCAGCATACGGCAGCAACCagcataaacagagctaaataagaTGTTC

Function


GO: NA

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA


RNA id representative length rna type GC content exon number start site end site
TU51966 True 215 lncRNA 0.46 1 10253724 10253938

Neighbor


gene id symbol gene type direction distance location
synpo2la synpo2l coding downstream 637 10244156 ~ 10253087 (-)
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding downstream 12941 10234757 ~ 10240783 (-)
usp54a usp54,usp54a,LOC106606172,LOC106576704,LOC107582762,LOC107698809 coding downstream 20643 10165718 ~ 10233081 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding downstream 124745 10076289 ~ 10128979 (-)
bmpr1aa bmpr1a,bmpr1aa,LOC108438195,LOC107666410,LOC107706029 coding downstream 181601 10035488 ~ 10072123 (-)
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding upstream 1687 10255625 ~ 10318195 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding upstream 69378 10323316 ~ 10330221 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding upstream 77795 10331733 ~ 10447727 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding upstream 195381 10449319 ~ 10488807 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding upstream 238899 10492837 ~ 10511847 (-)
G43910 NA non-coding downstream 10842 10241941 ~ 10242882 (-)
G43790 NA non-coding downstream 126093 10127414 ~ 10127631 (-)
G43787 NA non-coding downstream 137008 10115935 ~ 10116716 (-)
G43749 NA non-coding downstream 221649 10030568 ~ 10032075 (-)
G43782 NA non-coding downstream 224515 10028411 ~ 10029209 (-)
G43981 NA non-coding upstream 11418 10265356 ~ 10265588 (-)
G43982 NA non-coding upstream 37129 10291067 ~ 10305082 (-)
G43987 NA non-coding upstream 61787 10315725 ~ 10316448 (-)
G44103 NA non-coding upstream 399776 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 419408 10673346 ~ 10723668 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 92201 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 245163 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1024840 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1399930 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1469926 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1454676 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1756993 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1890902 12144840 ~ 12152522 (-)
nin nin other upstream 2181171 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2270698 12524636 ~ 12534215 (-)

Expression



Co-expression Network