sprn (sprn)


Basic Information

Item Value
gene id sprn
gene name sprn
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10552259 ~ 10558295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52056
TTTTCATCTTGCCTTCGCCTGTATGATCGCGCGCGCTGGAGCTCTCTCCTCCAGCACTCCACCTGTCATATATTAACATCCTTACATAACAGCTGCATCGTAGCATCAGATTTTAGTTGCCATATGACAACAGAAGAGGTAAACTGCGCGGATTTGGGAGAGCATCCGAAGCAAAAGGCTGAGGTGATGTCCAAAGGTGGCAGAGGAGGTGCCAGGGGTTCTGCTCGGGGTTCTGCCAGAGGTTCCATCCGAGGCAGTGCGCACGGAGGACGCTCATCCCGCATCGGTGGCTCGTCCTCTGTGAGGGTGGCAGGAGCGGCTGCAGCTGGTGCTGCAGTAGCGCTGGGAGCTGGAGGATGGTACGCTTCGGCCCAACGTAAACCAGATGACAGCTCTGAGCATGGGGACGATTATTACAGCAACAGGACAGACTGGGAACTTTATCTCGCCCAAACGTCTAGCGCAGTGACCCATAATTTCAAATATAGTGGACTGTTCTCATTACTACTGCCAGTAAACTTTCTGCTTCCTTGAAGGTGGAACAAGAAGCTTTAACAGCTCGAAAAGAAAGTTTACTGTGCAGTGTGTATTCCTAGTATTTTGCACTTCATAAAGAAAATTGGTATTAGAAGTTGTAGACTGAGCCACAACACCTAAACAAGCTTTACAGGACTTAAttggtttatatatatgttacgCTTCAGCAGGAATagtagaaaataaatataagaatcTAAATCAAATGGGCAGATCATATAAAAAGCTATTAAAACTGTGGATATATTTCACTTCATCACTGTTATATGAGTATAGCGTGCACAATACTCTGCTTGGAGATGTAATCCATATTCACCTCTTTtatggaagcaaaaaaaaagagacaaatagTTGAAtgttaaaaagtcatttaatgattaataatgaaatttaaacatcATTCAATTGACTCcttcataatttttttcaaataaaaatattgaattttcaGTATTCACCAATTCAGATTCAAAAATTCAGTTTTCACATATTCAACCAGTCAAATTCAGTTTGCAATGTTCACTTGAAAGAATACAAGTTAAGCATCCGGGCTACCCAGAGATGAGCAAAGGCAGTAGAGGCTTAGAATGACTTGGAACAGATGTCTTCCTGATCAGCACTAATAGTCTCTCATTCCAGGCTTAGTGCACAGGTAGACCAgatgtttaatgtattttttaaaaagcgattttacaaactgaatttgactggctgaatctgagcattGGGATGAGCAACCTGAACAAAATTTTTTGAATATATGaaattgtgatgtttatttctgGACACTGAAAGACTATTTGAATATAGATGATtgatttttgaaaatgtcagtctgaatcaaacactgaaataaaactacTTTGAATTTCAAGGAggtaaattcaaaacaaatacaTAGATGTGTGGTTTTTCAAGTAATACATTTCAATACTATGAATTAAAGGGTGTTTAAATTTTAGTATTAAGAATTCAATAGCATTTAACGTTCaaatctttgtttcttttttgtttccatACTCTAGGTTGATAGATAATCTtgcatctgtttttctttgtaagagCCATGTGCCaatgtaaaatatttgtgtgtCTACCTTTTACCACAGTATTTGATATATcataataacaaaatgtttaCTTGCAAACATTCACTCACTTCTCAGCTAGATACACAACTAAGCCTTTTAAGGTTGCTCCTTAAATCCAAGAGTGAGCTGAATAACAAACGCTAGCTAACAGATTACATACACTGCCTGTCAAGGTACATTATGATAGCACAACAATGACTAGTAATCTATAAGCGCATATAAGGTGGTTAATCTGCAAAGAAAGTGTTATGAGACAAGCAGTTAagttactatttttattattacttatttggTGCAACTGATTTTGTCTGCCTTGTTTGTCAGACAAACTCTTGCAATGCTTGCAGTATATTGTATAACTAATTATTAGAACATATTTAGTTCATACATTGTATGAACGGGCAATTTATACTAGTTTGTAATTGGTTACAGTTGTAATAGAATATTGTTTAATGTATTTCTATGTAAGACAAacaaagacattaaaataaacactgtatcTTTCTATGTAACTTCAATGTTTAGTCACACAATTACAGATTAAACAATGTGACAGGACAACCTTGTCCCCAACTGTTAGATAAGATTTTTAGAATCACATATAGATAGCTTAATGTGACTTTTTTATTGCTTGTTTCCATTATCTGTACTGTATAAGTACTGTATTCTTCAAGCGATGTTATGATCTCATATTATTCTGCAACCAACTTTCACTAAGACTGTGAAATGATTATATGCCCAGAGTTGGAAatatcattgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgtgtgtatatatatatatgactgaCTGGGAAAAATCATAGCTAGAGCATTTTgtaaaagatatttaaataaaattagtcACTGTATCACTTATTTATAGGTGCTGTTTTAATATTACATaggaaaatctgtttttatgtaagtatatattttattgtttgcacACAGTATTTCATTAGTATTACATCAGAGAACTGTAAGAAACAGCACCAAAGCATCTTTGTGCAATAGAATTTAATCAATATATTAATACAGGATTATCACAATTGCCATTACCATGAATATCATGAATCTCTCATCAACATAAGcaacatgttttgtgttttattagtcAAGCATGACTTTGCCCAGCTCTCCTTTACGGAAAGCTCTGATGAAGTCATAGGCTGCAGCGGTGTAGTTAGGCATTCTGATGGT
>XM_026937942.1
ATGAACCGAGCCATAGCCACCTGCTGCATATTCCTGCTtctctctgctttcctgtgcGACCAGGTGATGTCCAAAGGTGGCAGAGGAGGTGCCAGGGGTTCTGCTCGGGGTTCTGCCAGAGGTTCCATCCGAGGCAGTGCGCACGGAGGACGCTCATCCCGCATCGGTGGCTCGTCCTCTGTGAGGGTGGCAGGAGCGGCTGCAGCTGGTGCTGCAGTAGCGCTGGGAGCTGGAGGATGGTACGCTTCGGCCCAACGTAAACCAGATGACAGCTCTGAGCATGGGGACGATTATTACAGCAACAGGACAGACTGGGAACTTTATCTCGCCCAAACGTCTAGCGCAGTGACCCATAATTTCAAATATAGTGGACTGTTCTCATTACTACTGCCAGTAAACTTTCTGCTTCCTTGA

Function

symbol description
sprn Predicted to be located in plasma membrane. Predicted to be anchored component of membrane.

NR:

description
PREDICTED: shadow of prion protein isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52056 True 2836 TUCP 0.35 2 10552259 10558295
XM_026937942.1 False 414 mRNA 0.56 1 10555580 10555993

Neighbor

gene id symbol gene type direction distance location
si:dkey-191g9.7 LOC108263628 coding upstream 2068 10542610 ~ 10550191 (+)
si:dkey-191g9.5 LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575 coding upstream 12219 10528377 ~ 10540040 (+)
mmrn2a NA coding upstream 516869 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 557869 9976131 ~ 9994390 (+)
psda LOC108263482,LOC108438200 coding upstream 608271 9909353 ~ 9943988 (+)
dna2 dna2,LOC107743557,LOC108261390 coding downstream 14857 10573152 ~ 10588115 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding downstream 126205 10684500 ~ 10723757 (+)
nanp nanp coding downstream 224811 10783106 ~ 10785648 (+)
LOC113538283 abhd12 coding downstream 243872 10802167 ~ 10816200 (+)
LOC113537521 abhd12 coding downstream 258547 10816842 ~ 10824656 (+)
G44016 NA non-coding upstream 35373 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 228995 10318421 ~ 10323264 (+)
G43905 synpo2l non-coding upstream 305224 10242057 ~ 10247035 (+)
LOC117596896 NA non-coding upstream 388303 10161499 ~ 10163956 (+)
G43663 NA non-coding upstream 450728 10093735 ~ 10101531 (+)
G44044 NA non-coding downstream 334 10558629 ~ 10560523 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding downstream 53184 10611479 ~ 10611806 (+)
G44060 opn3 non-coding downstream 56851 10615146 ~ 10615586 (+)
G44182 NA non-coding downstream 416547 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 444865 11003160 ~ 11004990 (+)
trnak-cuu NA other upstream 2082378 8469624 ~ 8469881 (+)
G42685 NA other upstream 2085947 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2880849 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 2922119 7620545 ~ 7630140 (+)
G42075 NA other upstream 3331236 7203950 ~ 7221023 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 36279 10594574 ~ 10608704 (+)
dntt dntt other downstream 541298 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1124569 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1148640 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 1187453 11745748 ~ 11766414 (+)

Expression


Co-expression Network