G44059 (opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579)



Basic Information


Item Value
gene id G44059
gene name opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10611479 ~ 10611806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU52079
AtacaagagttttttttcttaccatgTGCACTGTGTACAAAATGTTCCCATAGCAGTAGGCCATGATCCCCACAGGAACAAAGAAGCAGgcaaagaggaataaaaggaTGAAGGAGGCATCATTGGGGTCTTTAGAGGCCCAATCCAAGGAGCAGCCCAGTTGGTGGATCTCCAGGGTGTACCTGTTCCAGCCCAGGAGAGGAGCACCAGTCCATGCAAGTGAGTAAAGCCAGATGTGGGTGATGGCTCTCCAGGCCCAAGGGAAATCTATGACCTTGGCATGTACCACTCGAATGTAGCGTTCATATGCCAGGGTACACAGAGTCAT

Function


symbol description
opn3 Enables retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human OPN3 (opsin 3).

NR:

description
PREDICTED: opsin-3

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU52079 True 328 lncRNA 0.49 1 10611479 10611806

Neighbor


gene id symbol gene type direction distance location
dna2 dna2,LOC107743557,LOC108261390 coding upstream 23364 10573152 ~ 10588115 (+)
si:dkey-191g9.7 LOC108263628 coding upstream 61288 10542610 ~ 10550191 (+)
si:dkey-191g9.5 LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575 coding upstream 71439 10528377 ~ 10540040 (+)
mmrn2a NA coding upstream 576089 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 617089 9976131 ~ 9994390 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding downstream 72694 10684500 ~ 10723757 (+)
nanp nanp coding downstream 171300 10783106 ~ 10785648 (+)
LOC113538283 abhd12 coding downstream 190361 10802167 ~ 10816200 (+)
LOC113537521 abhd12 coding downstream 205036 10816842 ~ 10824656 (+)
tm9sf3 tm9sf3,tm9s3 coding downstream 213416 10825222 ~ 10844291 (+)
G44044 NA non-coding upstream 50956 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 94593 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 288215 10318421 ~ 10323264 (+)
G43905 synpo2l non-coding upstream 364444 10242057 ~ 10247035 (+)
LOC117596896 NA non-coding upstream 447523 10161499 ~ 10163956 (+)
G44060 opn3 non-coding downstream 3340 10615146 ~ 10615586 (+)
G44182 NA non-coding downstream 363036 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 391354 11003160 ~ 11004990 (+)
G44222 NA non-coding downstream 441769 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 442272 11054078 ~ 11055854 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 2775 10594574 ~ 10608704 (+)
sprn sprn other upstream 53184 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2141598 8469624 ~ 8469881 (+)
G42685 NA other upstream 2145167 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2940069 7649198 ~ 7671410 (+)
dntt dntt other downstream 487787 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1071058 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1095129 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 1133942 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 2024514 12636320 ~ 12636406 (+)

Expression



Co-expression Network