G44060 (opn3)


Basic Information

Item Value
gene id G44060
gene name opn3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10615146 ~ 10615586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52080
CGAACAGGCTGTTGCTGAATCCGTCCCACACACACGTAGTGGTGTCCCACACCCATCCTCTCTCCAAACACGAGACCAAGGTGAAGTTGGTCCCGATCACCGACACCAGCAGGTCGCTCACACTGATGTTCACCAGCAGTAAGTTGGTGGGCGTCCGCAGCCTCTTAAACTTGTAGTAAAGTGCAAGGACGAGCAGATTGTTGCAGAAACCCAGCACGCCGATGGTTCCGATAGTGAAGGCGAGAAGTTTGTAGGTTCCTACAGGGAACAGCGAGGTGTCCGCGTGCATCCGAGTCCCGGTGTCGTTCAGAGGAGTCATCGCAGGAGTAATGTAGCGTCTGCCAttctgctactgctactgctggcTGGACTGGTGGCCGCTCGGAGAAACCTAGCGCGGAGTATGCGTGAAACTCCACGCTCTCTTGTCCTTCAGCACCG

Function

symbol description
opn3 Enables retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human OPN3 (opsin 3).

NR:

description
PREDICTED: opsin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52080 True 441 lncRNA 0.56 1 10615146 10615586

Neighbor

gene id symbol gene type direction distance location
dna2 dna2,LOC107743557,LOC108261390 coding upstream 27031 10573152 ~ 10588115 (+)
si:dkey-191g9.7 LOC108263628 coding upstream 64955 10542610 ~ 10550191 (+)
si:dkey-191g9.5 LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575 coding upstream 75106 10528377 ~ 10540040 (+)
mmrn2a NA coding upstream 579756 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 620756 9976131 ~ 9994390 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding downstream 68914 10684500 ~ 10723757 (+)
nanp nanp coding downstream 167520 10783106 ~ 10785648 (+)
LOC113538283 abhd12 coding downstream 186581 10802167 ~ 10816200 (+)
LOC113537521 abhd12 coding downstream 201256 10816842 ~ 10824656 (+)
tm9sf3 tm9sf3,tm9s3 coding downstream 209636 10825222 ~ 10844291 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 3340 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 54623 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 98260 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 291882 10318421 ~ 10323264 (+)
G43905 synpo2l non-coding upstream 368111 10242057 ~ 10247035 (+)
G44182 NA non-coding downstream 359256 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 387574 11003160 ~ 11004990 (+)
G44222 NA non-coding downstream 437989 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 438492 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 681906 11297492 ~ 11297714 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 6442 10594574 ~ 10608704 (+)
sprn sprn other upstream 56851 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2145265 8469624 ~ 8469881 (+)
G42685 NA other upstream 2148834 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2943736 7649198 ~ 7671410 (+)
dntt dntt other downstream 484007 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1067278 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1091349 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 1130162 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 2020734 12636320 ~ 12636406 (+)

Expression


Co-expression Network