G44182


Basic Information

Item Value
gene id G44182
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10974842 ~ 10978237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52228
AGTAGAAAATGTGAGGGAACAAAATTACCAAAGGTGAAAAATCAACCTTTATTAagggtaaaagaaaaaaaaaaaaaatcataaatgaatCTAAAATTAGAATACACCTATTTGCTCTCCATTTTGAAAATAGTTAATACCTCATGTGCACAATCAGATTTTGTTTCCTTCGCTTATAATTTTTAggcctttattttttttaaataataatattttttagtGTTATGTACATGTAATGCTGCAATAGCTTTTGCTGCTAAATCCATGGTATATTGATGTATACCATAGTACTTTATTCAGGCTGGGGAGTGGATGAGAATCAGTTAGGGCACCTGGTTGGGAGGTGAACAGGCCGGCATGAGCGCGAGCATCGGCCTCGGTGCGGTCGGCTTTCGCCCCTGAACTGCATGTTTATCCAAATCAGGTCGCTGCATGCAATAGAATTTTCAGTATCAAGTCTATTATTCATCTTGGCCCACTTTGCACATGACACAGAGCAGGAAAGCGCACAGGAGACGGAGACGCTGCGAGAGGAAAGCCCATCTCACACGTCGGTTCGTTTTCGATCTCGCTGATCATATGTCAATAACTAAAAGCGTGAGCAGACGACTAAAACGCAGTTCTGATTTAAAAGGCCTAGATGTAGGATAAGCCTTCAAACAAGCTGTCTCTAGTAGGTgaagaacattttctttttcagtgattgttaaaataattgtgcaattttttatacagtatgtagttaGGTTTGAGTATATGCCTAGAACTGTGATTCGCTTTAACTGTTCTTGATGTCTAACAAGTCCTGTGAAAACTTCATAACCAgtgtatacagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacactctcttaCATACAGTCTTCCCTGTCCCTCTGTTCCGTATACactgacacacgcacacacttttgATAGTTCTCACTCACACAGGATGTATAAAAACTACCCCTTCCCTAAAAACTACCAACACCATTCACTAGAACTAATACCACGTCAGGCCTCGTTGCTTCTGCCTGACTAGTGAAGTGATcagtagacaaaaaaaaaaaaaaaaaaaaagtactgcagtgacgtgtgtgtgtttccctcaAAGACCCACATAAAGAGTTCAGACAGTGTGACTGCAGCACATTGGATTAACATCAGAACATTGTGTGCTCGCCgcatttatatatctatatatctctatataCACAGATTTTCCTGCAAAGCTTGAAGAATAGAACCAACCTGCTAATAATGATGGTGGATATTTTTTTAAGACTATGGTATGGGCTTGAGAGAGGACGAGTGGGAGTTTAGGAGAAAACAAGTATTGGCTGCTGATGTGATGCATTTAAAAGTGAGACAGGGTTTACGAGCCCATGACAGTCCCGAGCTCGGTGTTTCACGGAGCGAATCGTAGATCGTCCCATCCCATGTTCCCCTAGTGACGTTTGTCACACTGGAAAAGGCCGCAGCAACCGTGGCTCGGGTTTTTAATCCTAAACCGTCACCTTTAGGATGGAACACTTTGTTcgcttttgaaaaaaaaaaaaaaaatgatgtaaaacaaGAGCTACTTTTTTTactgatggaaaaacaacaacaacaacagaaaactaATCATGAATAGCAATGAGGATCCTTATGGACGTGAATTCTGGGGGGTTTGTGATATTTCCTTCCCAACCCAGAAGGGTTTTCTAGATCTGTTCCTTTTCTGTAATAGACATTTGTTATGCACTACTCTTTGTATCTAGATAGTTAGCTATCAGTCAGCTATTTTtttgttgagagagagagcgagcgagagagagaaatagaaattgTGTGCTTTCTGACTGACGTGATCTTTTGCAATACCTCAATTTTGAAATATAATAGGAGAGAAATCAATATTTTCTAAGTAAGTTTattcaaatacaaaatatatattaatttaaatttgcaagaaaatgatttaacagattgttaattttatttttgtcatgtttatttgcttttatgtttaattttatttttttgagaaaaaaaatgataaaaaaaaaagcaactgaaGGAGCTAGAGCTTTATGACTTTAATAGAGTAAGAGTCAGCTGAAGTAGAGAGACGACCTTAACACGGCGTAAATGGAGAGAGAGGTTCGCCACCCACACGccacagtgttaaaaaaaaagagttcataCAAAATCCTACTccagagaaaaacaaaattaaaaaaaaaccaacaaaaaaaaaaaaaatggagtcgACATCCATTAGGTGCTTAAAAAGTCAACTGACGATACTTCCCTTGGTTTTGTATGTTTATAATCagtcatttactgaccagtgaaactaaattttttttgtttgtgatttttttttaaatgaaaagcttttttatgtttcttaAGTGTAGCCCATTTGTTTTGTAAAAGCAAATTGCCCTACTTTGTTAACCTGACCTAATTTAAGCTAAACTGATCTTCGAGGGTTCTTgattaaatggagaaaaaggaaagaatgttcttttttttattattaaataaaaacacacacaaagatccGAACAGTTTCAGCTGTAACTTGATCGAAAGCCCCCAAGGTGCATCAGCAGCGTGGTGGCCTTCTATTCACCTAAGACTTGAATTAGTCCCATTTTTTTAAGGCTATAACCTCGATTCTTTGTTGTAATGTGCAATACTGTTTGTACTgtttgtaaaaaagaaaaaaaaaatgaaaagaaaaagaggcatAAATCTTTAttgcagatttattttcattgcAAGCATTGTGATTCACTAAAATCATTTTCTACTGTGTATTTACCTACTCTACATGCTAGTACCTTCCAGTGGTAATGTAGCCTTTATACTGagaaatttttcattatttttagagattttttgcaaaaaaaaaagagaaaggaattaaaacatttacatattttttcttcttttttttatttcatatttctttacaGAGTTATTTCTCAACCATTAATATTGGCTATTTCTGGGGGAGACTTTCATATCTGGTCAATGTcgttaatattattttgtatttttacttggaataaattaattttatgatgctaattctttaaaaaaaacattttttctttttgttcattttatttgatgAAGCTGAGAACCTTTGTAATGTTACTAAAGTGTCTAGATTTTTGAAATGCGAAGCTTTGTGTTAACTCGCTGATGTTGCTTACATTAGTGTGACAATGATCTCAAGTAAGAGGGCAAAACTTCAAAACTAGGAATTGATGCTTGGTAATGGAAAATGATTGGTAATGTATGGACTGAATGGGCAATAAAACGAAATGGCAGAAAGGAGCGAATGTGAGGTGAATGTTGTAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52228 True 3396 lncRNA 0.35 1 10974842 10978237

Neighbor

gene id symbol gene type direction distance location
cpeb3 cpeb3 coding upstream 169 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 80671 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 118705 10849735 ~ 10856137 (+)
tm9sf3 tm9sf3,tm9s3 coding upstream 130551 10825222 ~ 10844291 (+)
LOC113537521 abhd12 coding upstream 150186 10816842 ~ 10824656 (+)
LOC113537959 znf518a coding downstream 66669 11044906 ~ 11053251 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding downstream 276384 11254621 ~ 11294980 (+)
trnag-ccc NA coding downstream 613098 11591335 ~ 11591405 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 834548 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 1059264 12037501 ~ 12120513 (+)
G44060 opn3 non-coding upstream 359256 10615146 ~ 10615586 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 363036 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 414319 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 457956 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 651578 10318421 ~ 10323264 (+)
G44211 NA non-coding downstream 24923 11003160 ~ 11004990 (+)
G44222 NA non-coding downstream 75338 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 75841 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 319255 11297492 ~ 11297714 (+)
LOC113545104 NA non-coding downstream 339548 11317785 ~ 11318875 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 366138 10594574 ~ 10608704 (+)
sprn sprn other upstream 416547 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2504961 8469624 ~ 8469881 (+)
G42685 NA other upstream 2508530 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3303432 7649198 ~ 7671410 (+)
dntt dntt other downstream 121356 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 704627 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 728698 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 767511 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1658083 12636320 ~ 12636406 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) cpeb3 LOC106604870 misc NC_048587.1 CM023241.2 13824243 ~ 13889406 (+)
eurasian perch (Perca fluviatilis) G197352 NA non-coding NC_053130.1 CM020927.1 28354111 ~ 28358361 (-)
striped catfish (Pangasianodon hypophthalmus) G226340 NA non-coding NC_047608.1 CM018554.1 15010086 ~ 15013361 (-)
bowfin (Amia calva) G111443 NA non-coding CM030134.1 CM030134.1 14311752 ~ 14312024 (+)