G44211


Basic Information

Item Value
gene id G44211
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11003160 ~ 11004990 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52258
TAGCATTAAAAGTTAAAGCTTGTTATGGATTAAGAGAAAGTAATTACAGTACCTCCCAGGATGGATTAAACAGGTCATTACAAAGCTCTTCGCAGAAACTTTCCAGGGGCCATTCTTGAGTCTTttgtacagagacaaaaaaataaaataaaataaataaaaagcaaatctTTGATACTGCAAATTTTCCCTACTgtcaacacacctgatccaactAATCAGTACTTAACCATGATCTAGATGAGGTGTGTTGTGAGAAGGGAAAGCCCAAAACAAGAACAATATTTTGACATAGCATACATTGGATGTTATTACAGGTGGGATCCCAGCATGTATGCAAGTATCATAtaacactgtatgtatgtgtgttgagtgtaacTGTGTTGGATATGTATGTGCATCAAGGGTCTTTCTGAACTAAGTATTTTTGTTTACACACCTCCTCAAATAAACTTGAGTTGTCAGGAATGTTATCAATTAAGACTTTGTTCTCAGCAGCCGGCTGCTCGATGACTACGTTTGTGGTTTTCCGCCGTTTCTCTTCTGGCTCTCCTTCGAAGCTGTCGTTGCTGAGAACTTTTTTCATTGGGGTCCATATCTCTAGATCTCTGCTTTGCCACCAGCTTGGCCATCCTTTTAGCCTTGTTCTTCTGGCGATTGCTCATGCCAGGCCGGAATTCGGAGTCTATAAACTCTGCTGCCTGCATAGGCTGTGGAGGAAACACATCCATTTTATTACCcaccactgaaacacacagctATGCAAACTGCAATTCAACAGAAAGACATACTGAATAGcatgaagagagagaacatgattttttttttttattgccgtATCCACACCGGATGTACGTGACTGAACACAGAATAACATTACCTTATCACTTGCACTGCTCATGTGCTGCAAATGATCAGTCAGCAATCAAATTCATGTCAAATATTTGACAACTGTATTTCATATTGATGAGAAACTGTAAGGAATCCAGTCCACACTTCTCTTATTtgttcaggaaacaacaataaaaatatgtgATGATTTTAAACTATGCTGTGGTATACATTTGACACAACACCCACTACTActagaaaaaaatgcaggttttttaaaagcattttttccaCACGTTATTTCCTAAAATGTAATGCCTGCAATAGCAAATTACAAGTGACCAAACCAGATTTGTTTGCATAATGAGAGTTAGTTAGCTACCAACATTATAATTTCACCATGGAATAAGTCTTACTTAAGGGACATACGGTGACATATATGGTAGTATGGTGACTGTGATGCATGCAAACTGACTACTCAAACTGAGTCACATGTCAGGCAGAAGTCGGACTTGAAACAACACACAAAAGTGACTGCATCAGGCATATTAAAGTACAGGAATTTTAACTTTAGTCATTATAGCCTCCATTCACAATGAACCAGGAAAACCTATTGCTGTCAAATTATTGCTATGTTAGAGAGCAGCTCACCACCTTGCATGAGTGAAAAAGCAGGGTGGGGCCATTTTGTCTGCATCTGGAGAAGCTTATCAGATGCTCCTGCGTGGGGCTGATAAATGCAACCAGCCCAAAAGAACAGGTATGACGGACTAAAACACCTACTAACACACTGTACAGAGAGTTTAAAAGACATTAATGTGATACTGAAagtaaaatatgatataaaagaTGTGATATTAGCACTTTCCAACCAATCCATGTTTTAAGGGTGGTGGTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52258 True 1732 lncRNA 0.38 2 11003160 11004990

Neighbor

gene id symbol gene type direction distance location
cpeb3 cpeb3 coding upstream 28487 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 108989 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 147023 10849735 ~ 10856137 (+)
tm9sf3 tm9sf3,tm9s3 coding upstream 158869 10825222 ~ 10844291 (+)
LOC113537521 abhd12 coding upstream 178504 10816842 ~ 10824656 (+)
LOC113537959 znf518a coding downstream 39916 11044906 ~ 11053251 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding downstream 249631 11254621 ~ 11294980 (+)
trnag-ccc NA coding downstream 586345 11591335 ~ 11591405 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 807795 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 1032511 12037501 ~ 12120513 (+)
G44182 NA non-coding upstream 24923 10974842 ~ 10978237 (+)
G44060 opn3 non-coding upstream 387574 10615146 ~ 10615586 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 391354 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 442637 10558629 ~ 10560523 (+)
G44016 NA non-coding upstream 486274 10514337 ~ 10516886 (+)
G44222 NA non-coding downstream 48585 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 49088 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 292502 11297492 ~ 11297714 (+)
LOC113545104 NA non-coding downstream 312795 11317785 ~ 11318875 (+)
G44463 NA non-coding downstream 379802 11384792 ~ 11385164 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 394456 10594574 ~ 10608704 (+)
sprn sprn other upstream 444865 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2533279 8469624 ~ 8469881 (+)
G42685 NA other upstream 2536848 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3331750 7649198 ~ 7671410 (+)
dntt dntt other downstream 94603 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 677874 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 701945 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 740758 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1631330 12636320 ~ 12636406 (+)

Expression


Co-expression Network