G44262


Basic Information

Item Value
gene id G44262
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10922309 ~ 10925258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52312
TTAAAGTTTTTTCCATAATTGTAGCAAAATGAAATAGTTTTCTGAATTACATATGAAACAACATGAATGTGCATTTTGTCTTGGTATGTATTGATATATTGAGATCCACACTTTTCTACAGTGTGATTCTATGAGTTTCTATAGTTTTTCTACAAGATGATACAACACACAtgagatcagaaaaaaaaagagcaatacTAAAAGAAATGTTTACTAGGAGTAATGTTTAACAACACCAGTAAGATTTTGAAAGTACCCATGAACAAATCTAGGTTCTTGTGCTTTTCCTTCCGTGTCCCTCACTTCCAGCTCTCCTCCAGGGCACTCTGCAGCTTATATAACTGCTCTTCTACAAATCTCCTGCCCCTATTTTGCCTTAAGGTACACCTGTTCCactatttttaaattgcttttttaTGGACTAGGTCAGTCTGTTTGTAGTCTTCAGGGAcacatttcttctttctgcagTTTTTGGGCtatgaaaatgtgtttgtcACACAACAGGAGATTAAAAAGGCACTGTATATAGAGCACACAAATATTAATCACAGTTACGTTTTTACTGTTTGTTAAGCTCATACAGCATTGACACGGCCTACTGAGTTCAGACATAGTTTAATGTTATAGGCAAAGCAGCTTAAGGTCACCTTTACTGGCACCTACCTCCGTCAATCAAACAAGGGCATCTCAACACCACTACCTGCTGTTGATATAGGCTGTGGGGCAATTTCAGGCACCACACTTTTAAgtaaggtataaaacacttggaggtgtGCTCTaggaagtggtttattcctcttataacacagcagtttgccaatagttgtgtttttttactcaataaatgaatgaaacattatgcctatttaaacatttattattacatttaattttgtggaacgtccatgaaacaatatagttcctgttaccacttatgttatagcagttgtAAACAGTtgtcccctcaccagcctctctttttctctcttgaagttgataagacacagcttgtcatgttaccgaaaaACCGGAAAGCCCAtagtcttgaagactttcccatagtGGACAACTTattgagtgttacaaagcactgacactggagactccttccataaatgttaaacatctccttacagaaagcttcaccatatcaacaattagaaatttttttttactcagtctATTCTAAGCCTTGTATTACATGGCACATATAAGTctttgtgtaagttgttactatagaaacaataacatgttgGGACaagtgcatttatatatatatattgttttgcattacagccagcactatcgtcagagctgctattctagaaaatcaatcagcaccttctgaccaatcagtttcGAGAATTCATCATCACTGTtgtataatcttttttttttttaaagatagacattctttctttcccatGTTTTTATAGCATTGTGTTTGTagtaatttaaaattattgaTCAGGTCTGTCGTTACACATTCTTAATGTAATGctgctaattttatttttatttttaaccagtAGTTTGCTCATTATCTGGCAGGTTTAGCACATTTCAGACTCTTAACACGACTGCCGTTTCAGCAGCCCACATCTgcttaatataatattaactcGATTGTATGTTGCACAACTGGTTCCTCCCATGATCAAAGTATGGCcattaaattactttttataAAGGGTTGATGTTTTTAAAgggtacatttttttgtttttcctcaaaGTCTACTTATAATGTTTGTGGTTTTTGAATACATGAACATTTTCCAACAGACCACTTCTGATTGCGtttacatttacctcatttggctgatgcttttatccaaagtgacttaaaaggacttgagacaggatacaacggAGCATTTGTACGCGGacaccctgaccatcacacccgtttgtgggccttccccaaactgttgccacaaagtcagcAACAGTTAACAGAAGGTGAATTAcagtttcacttcactggaactacggGGCCCGAACATgtcccagcatgacagtgtcGCTGTGCAAAAAAGCGAGGTCCATGGTTTTCGAGGTTGGAGTGGATGGACCAAAGTGGCCTGCAGAAAGCCCCAgcatcaaccccactgaacacctttgtgatgaactgaaacaccgaCTGCATGCCATGGCCTTCACGCCCAACaacagtgcctgacctcactaatgctcttgtggctgaatgagcaaatcctcaCCACTATGCTctgaaatctagtggaaagccttcccagcaaagggaggactaaatctggaacaggatgttcaaaTAGCACATATTTgggtgatgctcaggtgtccacgtacttttggccatgtagtgtgcAGCACTCATcgcagttagctggctagcttgttgctaacaaaagaagaacatggaAGCATCTAGGGTTTTTTCCTATTTGTAGCTTGAACACAAAGAGGTCAAGAATGACATAATTCTCAGTTCTGACTTTCCGCTTCTGAGGTAACACACCCTGCAGCGTTTAAAGCCCTGGAAGATAAATAATGGCATCTGCTGGACGTACAGAATAACCCTATAGGTTTGGGACACATAATCCTTCTGAAGTAAGGCCAACAGCACAGCAAGTTGATAAATCTCACTCACTGAAAGTTTACAACAGTAAAACTAGGCTATTGCTGCAAAAGTGAGAGGGTTGTCCATTTCTAGCATTGTTTATTAGATCAAGCCTGTATAAATATAGACCTAATAAGTTTATTAAGTTAGAACATTAGCAATGGCGCATCCTTAGTCTAGATAAACCTGCCTCGTAATCAGTGCCATTAaggtataaaatattaaaataatatggaCTTTTTTGCAAATTAGTTGCAGATTAGTTTCCACATTTAAACTTGAACTAGAGTCAGAAGTGTATCTGTGTTTACACAGTATGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52312 True 2927 lncRNA 0.38 2 10922309 10925258

Neighbor

gene id symbol gene type direction distance location
dennd10 fam45a,LOC106576813,LOC106604714,LOC107711433 coding downstream 60199 10856138 ~ 10862110 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding downstream 72596 10845031 ~ 10849713 (-)
polr1b polr1b coding downstream 125214 10785741 ~ 10797095 (-)
LOC113545523 cyp1b coding downstream 186412 10731531 ~ 10735897 (-)
cdc42ep3 cdc42ep3 coding downstream 263068 10650453 ~ 10659241 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding upstream 57336 10982594 ~ 11010366 (-)
ccnj ccnj,LOC107562385 coding upstream 112711 11037969 ~ 11041301 (-)
blnk LOC108263522 coding upstream 129510 11054768 ~ 11094954 (-)
vent NA coding upstream 397462 11322720 ~ 11324343 (-)
vox ventx coding upstream 402371 11327629 ~ 11328847 (-)
G44173 NA non-coding downstream 105017 10816672 ~ 10817292 (-)
G44105 NA non-coding downstream 198641 10673346 ~ 10723668 (-)
G44103 NA non-coding downstream 266465 10653714 ~ 10655844 (-)
G43987 NA non-coding downstream 605861 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 617227 10291067 ~ 10305082 (-)
G44271 NA non-coding upstream 28247 10953505 ~ 10956492 (-)
G44274 NA non-coding upstream 49561 10974819 ~ 10978423 (-)
G44275 NA non-coding upstream 53388 10978646 ~ 10980295 (-)
G44582 NA non-coding upstream 461948 11387206 ~ 11387946 (-)
G44818 NA non-coding upstream 914194 11839452 ~ 11839822 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 760786 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 913748 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1693425 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2068515 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2138511 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 783356 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1085673 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1219582 12144840 ~ 12152522 (-)
nin nin other upstream 1509851 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1599378 12524636 ~ 12534215 (-)

Expression


Co-expression Network