G44398


Basic Information

Item Value
gene id G44398
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11297492 ~ 11297714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52456
GCAGGACCCAAAAAACATCACAGGCTAGGTCACATATCAAGCTtctgggacaaagaaagaccacatcgATTAACACATGAGCATATTGGACACTGTGTGACACATTTACTGCACTCATTAATCTTTAGTAAATAGCTTATTTTGGTCTGGgttgctgtggaataaatttataatgtggtataaatttataatgtgtttatattttgggaaaagcTAAGTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52456 True 223 lncRNA 0.35 1 11297492 11297714

Neighbor

gene id symbol gene type direction distance location
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 2512 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 244241 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 322819 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 403321 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 441355 10849735 ~ 10856137 (+)
trnag-ccc NA coding downstream 293621 11591335 ~ 11591405 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 515071 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 739787 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 836385 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 1032336 12330050 ~ 12340992 (+)
G44221 NA non-coding upstream 241638 11054078 ~ 11055854 (+)
G44222 NA non-coding upstream 243639 11053575 ~ 11053853 (+)
G44211 NA non-coding upstream 292502 11003160 ~ 11004990 (+)
G44182 NA non-coding upstream 319255 10974842 ~ 10978237 (+)
G44060 opn3 non-coding upstream 681906 10615146 ~ 10615586 (+)
LOC113545104 NA non-coding downstream 20071 11317785 ~ 11318875 (+)
G44463 NA non-coding downstream 87078 11384792 ~ 11385164 (+)
G44704 NA non-coding downstream 520014 11817728 ~ 11819947 (+)
G44777 NA non-coding downstream 657275 11954989 ~ 11995143 (+)
G44768 NA non-coding downstream 660826 11958540 ~ 11962186 (+)
dntt dntt other upstream 89630 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 688788 10594574 ~ 10608704 (+)
sprn sprn other upstream 739197 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2827611 8469624 ~ 8469881 (+)
G42685 NA other upstream 2831180 8465747 ~ 8466312 (+)
LOC113545306 cfap46 other downstream 385150 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 409221 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 448034 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1338606 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 1341603 12639317 ~ 12643304 (+)

Expression


Co-expression Network