G44582


Basic Information

Item Value
gene id G44582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11387206 ~ 11387946 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52647
AGGAGTCTAACTGCTCCTCTTGAGGAAGATGGGGTTTTAGACTCAGGAAATTATCAGCTATGTTCAAGGAAATGTTCAGTGTAAGCTACTTCACTCGATTTTGCACATTCttgcatttcattataaaacgTGTTCTCTTGCTCGGTTTTCTAAGCTACTACTTCCCTTCAtcttttaacagaaaaatgGTTCAACAAATAGCCAACTTGGTGTAATGTATGGATCAGTCATGTGCAATGCAAGTAGTTCACATCACATTgattgaaaaagagaaaatagttTTGCCCATCCTGTGGAAACCTGGATGCCAAATCTGTTGTCTCCTGTTTCTTCTACTGCACCTTTGTATTCTCTCAGCTCCTAAATAAAACAGGATAAACACTACGTTACAGCCGTGGCCATCTTTAGTAACCTTCCTCCCATTCATTTCAGACCCCTTCCTGACGTTAGTAGTGGAACATTAGTAGTAGTTGGACATCTAAATGGCATGTGTGTCATTTTCCCATCAGTGTGTCAAACTGGAAAAGAGGAAatctggcataaaaaaaaagactcactAAGCTTTCTTCACTCAAATCCCGATTACTGTGGTGAGCTTCGCTCTTCAGAGACTAGCTAAACTGCTGTCTATGCGAGTCTGTTTTGAACTATCTGTACCATTTTGGAGCGCATTACCAAGACTGCTGGCAGTGTACGTATGTGCAcaagcatgtgtgtatttgggattgtgtgtgtgtttcg

Function

GO:

id name namespace
GO:0060485 mesenchyme development biological_process
GO:0048368 lateral mesoderm development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52647 True 741 lncRNA 0.41 1 11387206 11387946

Neighbor

gene id symbol gene type direction distance location
LOC113544651 kndc1,LOC104962727,LOC107573641,LOC107373061 coding downstream 14219 11330964 ~ 11372987 (-)
vox ventx coding downstream 58359 11327629 ~ 11328847 (-)
vent NA coding downstream 62863 11322720 ~ 11324343 (-)
blnk LOC108263522 coding downstream 292252 11054768 ~ 11094954 (-)
ccnj ccnj,LOC107562385 coding downstream 345905 11037969 ~ 11041301 (-)
LOC113544831 adgra1 coding upstream 1929 11389875 ~ 11566240 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding upstream 207284 11595230 ~ 11650202 (-)
valopa LOC100305024,LOC108426856 coding upstream 384061 11772007 ~ 11786635 (-)
LOC113540195 inpp5a coding upstream 429782 11817728 ~ 11973505 (-)
LOC113542467 lrrc27 coding upstream 634045 12021991 ~ 12030144 (-)
G44275 NA non-coding downstream 406911 10978646 ~ 10980295 (-)
G44274 NA non-coding downstream 408783 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 430714 10953505 ~ 10956492 (-)
G44262 NA non-coding downstream 461948 10922309 ~ 10925258 (-)
G44173 NA non-coding downstream 569914 10816672 ~ 10817292 (-)
G44818 NA non-coding upstream 451506 11839452 ~ 11839822 (-)
G44820 NA non-coding upstream 524264 11912210 ~ 11914029 (-)
G44848 NA non-coding upstream 619880 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 853663 12241609 ~ 12242121 (-)
G45236 NA non-coding upstream 902381 12290327 ~ 12303541 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1225683 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 1378645 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 2158322 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2533412 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2603408 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 320668 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 622985 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 756894 12144840 ~ 12152522 (-)
nin nin other upstream 1047163 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1136690 12524636 ~ 12534215 (-)

Expression


Co-expression Network