G44777


Basic Information

Item Value
gene id G44777
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11954989 ~ 11995143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52856
attattattattattattattattattattatttgagaaTGCCAGGGCAGCTAGCCAGGCTGGGTTTGGGTGGTTATCAAGCCTGGAAtaagtttgatttaaaatttCTCACAAAAGAAACAAGGCATCTACTACAACAGCTACACAAACACGTGGTTCATTTGCCACTTTCCAGTGAAATCCCTAAATGACATGGGCTAAATCGCCAACTCTATGTCAACTCATCAATCAGCCGAGGTTTTGACTGATTCCTGAGAAGCAGCTCAGATCCTGCTGCAATTCAGAGCATGTGTAGATCACATTGCGGCAAATCAATACTGAGATAAAACACTTCTAATGCCGGATTTCTCAGAAGCAACAGACCACACTCAGGCACTCCTGAAGCAGCAGAACAGTTCAAAACCAGAATAAAGTGCACGGAAAAGACTGCGGTCAAATTCAACGGAAATAGTCCTGTCGTTAAAAGCAGATTCTGCCAGACAGGCTGGCTCGCTTAGGAGTCTCTGGGTCGGGTATGCCTTttgtgtgggaaaaaaaaaaaaaaaagttatatgaACTTATTTGAGTGTTTATTTCCATGACCTAGTGTTTGCCCAAAACTTCATATGAATTTGCTTAAAGATTAAGGACGACCATATCTGTTCCTGGAGACCCTGGCACCAGGCAGACCTCGCTGGCATGGCTGCTTTCTCCCCAGTGACACTTTCCCACCTGTTGCACTATTAAACCCTGCACAAATCTAATAACACCCAGTTCATGCTCAGCACACAAAGCTCATCAGCGTTGTAGCATAATGTACCCATGTTCCACACTTCTTTTACAAGACAGCTGTCTCATTTATTTCTGATCAGGTGCCAAAGCTTGTAAAAAGCTGGTGTTGCCTTGCCTCCATGAGCTTTTGGTATTTACATTTGGAGAGGGGAAGACAAAACACATTCTCCATTTGTCTAGCTGCATCACGTGACCATAACATGAATGTAGGCTTTACCTGTGTTAAGAACTGTTGTCTGTTTTATcgttctgtgttttaaactcgGACAATACCAggtttcattttgattttgctGAACGACAACAGAAAAGAGCACTTCTGGAGTGTTACTGAAGATAAAGTGAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52856 True 1120 lncRNA 0.42 2 11954989 11995143

Neighbor

gene id symbol gene type direction distance location
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 139337 11812785 ~ 11815652 (+)
trnag-ccc NA coding upstream 363584 11591335 ~ 11591405 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 660009 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 901738 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 980316 10927320 ~ 10974673 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 42358 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 138956 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 334907 12330050 ~ 12340992 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 408806 12403949 ~ 12418948 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding downstream 522410 12517553 ~ 12522746 (+)
G44704 NA non-coding upstream 135042 11817728 ~ 11819947 (+)
G44463 NA non-coding upstream 569825 11384792 ~ 11385164 (+)
LOC113545104 NA non-coding upstream 636114 11317785 ~ 11318875 (+)
G44398 NA non-coding upstream 657275 11297492 ~ 11297714 (+)
G44221 NA non-coding upstream 899135 11054078 ~ 11055854 (+)
G44843 NA non-coding downstream 31681 12026824 ~ 12027030 (+)
G44846 NA non-coding downstream 34491 12029634 ~ 12030106 (+)
G44891 NA non-coding downstream 136664 12131807 ~ 12132177 (+)
G44970 NA non-coding downstream 148974 12144117 ~ 12144402 (+)
G44974 NA non-coding downstream 159241 12154384 ~ 12156122 (+)
LOC113544122 NA other upstream 188575 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 209765 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 247984 11706935 ~ 11707005 (+)
dntt dntt other upstream 747127 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1346285 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 641177 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 644174 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 934416 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 987263 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 1036907 13032050 ~ 13034350 (+)

Expression


Co-expression Network