G44818


Basic Information

Item Value
gene id G44818
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11839452 ~ 11839822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52906
ctcaaacactcacatccatgcacacaccaacactcacatccatgcacacaccaacactcacatccatgcacacaccaacactcacatccatacacactcaaacactcacatccatgcacactcaaacactcacatccatgcacactcaaacactcacatccatgcacactccaacactcacatccatgcacactcaaacactc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52906 True 203 lncRNA 0.47 2 11839452 11839822

Neighbor

gene id symbol gene type direction distance location
valopa LOC100305024,LOC108426856 coding downstream 52817 11772007 ~ 11786635 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding downstream 189250 11595230 ~ 11650202 (-)
LOC113544831 adgra1 coding downstream 273212 11389875 ~ 11566240 (-)
LOC113544651 kndc1,LOC104962727,LOC107573641,LOC107373061 coding downstream 466465 11330964 ~ 11372987 (-)
vox ventx coding downstream 510605 11327629 ~ 11328847 (-)
LOC113542467 lrrc27 coding upstream 182169 12021991 ~ 12030144 (-)
srfb srf coding upstream 316395 12156217 ~ 12186613 (-)
ptk7b LOC108263634,LOC108426849 coding upstream 350395 12190217 ~ 12289852 (-)
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding upstream 451965 12291787 ~ 12330928 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 503413 12343235 ~ 12356768 (-)
G44582 NA non-coding downstream 451506 11387206 ~ 11387946 (-)
G44275 NA non-coding downstream 859157 10978646 ~ 10980295 (-)
G44274 NA non-coding downstream 861029 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 882960 10953505 ~ 10956492 (-)
G44262 NA non-coding downstream 914194 10922309 ~ 10925258 (-)
G44820 NA non-coding upstream 72388 11912210 ~ 11914029 (-)
G44848 NA non-coding upstream 168004 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 401787 12241609 ~ 12242121 (-)
G45236 NA non-coding upstream 450505 12290327 ~ 12303541 (-)
G45249 NA non-coding upstream 528691 12368513 ~ 12369349 (-)
trnag-gcc_1 NA other downstream 130768 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1677929 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 1830891 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 2610568 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2985658 8801243 ~ 8853794 (-)
pwwp2b pwwp2b other upstream 171109 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 305018 12144840 ~ 12152522 (-)
nin nin other upstream 595287 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 684814 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 791391 12631213 ~ 12633418 (-)

Expression


Co-expression Network