G44820


Basic Information

Item Value
gene id G44820
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11912210 ~ 11914029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52909
attttcttaGCCAAAGACTGTACAACACTCCTCCGTAGCACTGAACACAGATTTAGTTCCAATTGCTTAAAGTCACTATTGCCAATAAATTGCACAGAAATGCTTTAAAGATGCGGTTTGTAATAATCTATAATGAGCCACTCACcaccaaaaaacatgctggaagGTGGAGAGGCAATTCTAAACTGCTCCtaaatgtgaatgtgtgtgtgtgtgtgtgtgtgttgactggACTGAcgtcctatccagggtgtattcccacctcataccttgtgttcctgggataatgTATTGATTCAGAATATTGCTATGCATTGGATATGGCTAGTTTCTTaatttcaggcttctgtttacatttttccggCCCTGAAAATAGCACCACCTTGAGTCAGAACAGAGCTGCCTcagtttttacttttactttacaaGACAATTCATATAGTTCTAACAGAGAGATGGAGCTAGGATggcttgtcagtgttttcatttcagttgtAATATTTCACACATGCAGAGAGCTCTTTCTCTATCGTTTCTTTATCTGTGCCTCGTTTGTGCTGAAGAAGTGGATTGAGGTTGATGTGGTAAGGTCATGAGGAAGCTGTGTAACAACTGCATAGGGTAATGCTgctagccacacacacacacacacacacacacacacttttcttcctcttgtcaaAACATTCTGGCGCATGCATAACCAGGTTAAAATATGGCAAACTAATTCCATAGGCTCTCATATGGTGCGAAGTACAGAGCACAGTGAGGCTATTTGAATGGAGGAGATGTCAGTGGAGCAATATTGTAGCGCCATAACTCTCCGAGGCCATCAGTCAAGCTTTCAGGAGTGCaaatacacagcacacacatccaCTCAGCCCGACcccgacacacacacgcgcacacactctctccctagACATATGTTGAGCGCCAATCGATGAGTCTGCCATCAGAAGTGAATTATTAAGGGGATAAGGCAAGCTGGGGCTCACTGGAAAAAATTTGGGctgaaatatacacacaattaaTAGATTGTACAGAGGGATGGAAAACGAATGCCTTTATTATAGCGAGCCTAATCTGTGGAATCTGAGTTCACGCTCTCCTCGGCACTATCGCAGCAATGAGCCCATAACATCCACTTATGTGTGTTTTCCCTCTCTGTTCccccccacaaacacacacacgggtgCAGAGCCAGGGGCCTCATAAAACCAGGCtgataaagtggtgtgtatatgGTTGGATTAGTTTAGCGGGGGCATCAAGATATAGGGTGAGGAGTAAAtcagatgggtgtgtgtgtgtttacgtgttCGCCAGACACAGATAATGATGTGATTGGAGCGTGCAGGGGGCCTGCTGCTCTGTGTACATTATGGTGCGTGGCCCTTGGTGtgactcctgtgtgtgtgtgtatgtgtgtgtatatgtgtgtgtgtgtgtgagagagaaagagagagagcatgaagcCCAGTGAAGGTGAGCCTGTCATATCGATCTTTTTAACGCTAAAATATGAGCCACTTTACTCTGCTCCCCAGCCCagtgatgtgaaaaataataactCGGTcccaaattaaaaatattgatCGCTCAGGAGGTGTTGAGAGCAAATAAACACCcactgaaggattttttttcagccCTCCCCCCATCTTTCTATGTCTTCAACAACACTCcctgcgtacacacacacatacttggggcatctctctatctctatctgaTGACAGTAGGTCAGGCTGCAGTTGCGGGGTGTGTAAATATGATCAGTGTGTGGTTAAATATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52909 True 1800 lncRNA 0.44 2 11912210 11914029

Neighbor

gene id symbol gene type direction distance location
valopa LOC100305024,LOC108426856 coding downstream 125575 11772007 ~ 11786635 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding downstream 262008 11595230 ~ 11650202 (-)
LOC113544831 adgra1 coding downstream 345970 11389875 ~ 11566240 (-)
LOC113544651 kndc1,LOC104962727,LOC107573641,LOC107373061 coding downstream 539223 11330964 ~ 11372987 (-)
vox ventx coding downstream 583363 11327629 ~ 11328847 (-)
LOC113542467 lrrc27 coding upstream 107962 12021991 ~ 12030144 (-)
srfb srf coding upstream 242188 12156217 ~ 12186613 (-)
ptk7b LOC108263634,LOC108426849 coding upstream 276188 12190217 ~ 12289852 (-)
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding upstream 377758 12291787 ~ 12330928 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 429206 12343235 ~ 12356768 (-)
G44818 NA non-coding downstream 72388 11839452 ~ 11839822 (-)
G44582 NA non-coding downstream 524264 11387206 ~ 11387946 (-)
G44275 NA non-coding downstream 931915 10978646 ~ 10980295 (-)
G44274 NA non-coding downstream 933787 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 955718 10953505 ~ 10956492 (-)
G44848 NA non-coding upstream 93797 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 327580 12241609 ~ 12242121 (-)
G45236 NA non-coding upstream 376298 12290327 ~ 12303541 (-)
G45249 NA non-coding upstream 454484 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 713017 12627046 ~ 12627481 (-)
trnag-gcc_1 NA other downstream 203526 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1750687 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 1903649 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 2683326 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 3058416 8801243 ~ 8853794 (-)
pwwp2b pwwp2b other upstream 96902 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 230811 12144840 ~ 12152522 (-)
nin nin other upstream 521080 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 610607 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 717184 12631213 ~ 12633418 (-)

Expression


Co-expression Network