G44846


Basic Information

Item Value
gene id G44846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12029634 ~ 12030106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52936
TGTACTTGCACACATAATCTGGTATGACCTTCAGCTTCTGTCTGCTTAGATAAAGGATGTCGGATGAGTCATGATGCATTTGATGCTCTGAAGAATCATCACCTCGACGCACAGAGGCTCGGCTCGGAGATTTCAGAGCATTCTCACTGCAGTCAAGACTCAAGTGGAGATCACTCAGGTCCTCTTCCAGAGCTGTCATTATTCAGCCTTATATAATGTGCTAACTTTCCATGCCCGTGCTGATAAAGACACAACTTTGCAGCGGAGTGAATTATAGTTATTTAGACAGGACTTTTGCAAGTTAACCTAGCTAACTAATTAGCCTAGCAACTTGTATCATGCTGCAATAATAAGGTTCTGTTTTTCTACTGATTCGAAGCGCTGAGGGGAATTTATAGTCGCCATTCAAACCTTAAAGCCATACTTAAAAGCCAAAAGCCAGCTTTCACATGTATTCCTTTTCATAACGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52936 True 473 lncRNA 0.42 1 12029634 12030106

Neighbor

gene id symbol gene type direction distance location
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 213982 11812785 ~ 11815652 (+)
trnag-ccc NA coding upstream 438229 11591335 ~ 11591405 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 734654 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 976383 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 1054961 10927320 ~ 10974673 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 7395 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 103993 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 299944 12330050 ~ 12340992 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 373843 12403949 ~ 12418948 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding downstream 487447 12517553 ~ 12522746 (+)
G44843 NA non-coding upstream 2604 12026824 ~ 12027030 (+)
G44777 NA non-coding upstream 34491 11954989 ~ 11995143 (+)
G44768 NA non-coding upstream 67448 11958540 ~ 11962186 (+)
G44704 NA non-coding upstream 209687 11817728 ~ 11819947 (+)
G44463 NA non-coding upstream 644470 11384792 ~ 11385164 (+)
G44891 NA non-coding downstream 101701 12131807 ~ 12132177 (+)
G44970 NA non-coding downstream 114011 12144117 ~ 12144402 (+)
G44974 NA non-coding downstream 124278 12154384 ~ 12156122 (+)
G44972 NA non-coding downstream 126142 12156248 ~ 12158228 (+)
G45040 NA non-coding downstream 285427 12315533 ~ 12315870 (+)
LOC113544122 NA other upstream 263220 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 284410 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 322629 11706935 ~ 11707005 (+)
dntt dntt other upstream 821772 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1420930 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 606214 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 609211 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 899453 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 952300 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 1001944 13032050 ~ 13034350 (+)

Expression


Co-expression Network