G44974


Basic Information

Item Value
gene id G44974
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12154384 ~ 12156122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53076
atcaatagattttttttattacaaaacttTCTGTACACTTGCTGTTACATGAAGATTctcaaaaaaagaagaaaataataataaatggaaaagcAAGCAACAACCTTAAAATTCTAACAATAAAGGAACCAGTGTTCATTCTGCTTCTCACACCACTTCataactataaaacaaacatctAAAATTGTATCAAACAAAGATTTCAGTGAAAGATTTCACATTTTCTATAGGAGAAAACAGAGTGTAGGAGAAACAGTGTTTGGCTTGAAGAGAACCTTGCACAACTCCATGCCACCAAATGCTAAACTGGGCACTGAATACAAAACTGTGAAAGCCGCAtcaaccaagaacagaaagccatTCCCACAAAAACGCAGATATAAATAAACGTGTACAATACTATTCCAAAATACAGCATTTCTACAAAAAGGCTTAAGGGCAACGTGTGTGAGCTGCAGCATGATCATACTTTGTCATTTGGTAAAATGAGAATTCAGAGTGTCAAAACCAGGTAGCAGGgcggaggaaaaaaaaaaaaaactgtctaaTGTATTGAACCAGTCcaaactgtctcacacactgagGCCTGGTTCAGAGCCAGTAGCTGAAGTAAAACTGGAACTGAGCAAAGAGAGGTGAGGCTGTGATTTTAGCAGGTTTTATCTTGGTAGTTGCTGGTTAAAACAAACAGAGATAAATCCGCTTGCATTGTGAATTCATTGTTTGACGGATTAACAGTCAGCTGAGCCCTTAAGCATAAACAGAGTCACCTGAACCTCTGACAAACTGCATAACAGTTTGATGCTCATTTTCATAGGCTTTAGTGTTATTAAAAGTATACCATCATACAAGTATACTATACATTTCCCCGATAAGGTTCAAACTTCAGAGAGAACCGGACATTCCCATTTCATATCCTCTATTTAATCTCACCTTCTCAGTTCTGAGTGTGGTTAACACTTTCAGTGCCTTACATACGTATACACCCCCCTTGAACTTGTCCAACCCCTAGCTAAgtctatttcagttccaggttttaATAGTACAAAAAAAGTGGAAATCATTAATCTACACAAAAAAGAccacaatattttgtttactctGCTTTGGGTGCCTGAGAAattgtgtatgcagaagagggcagttagtaCTTTCTCCAaaatgtgttatgctgccccGTGATGCGGAATGGACAGCAGATTGAAAAGATGCATTAGCTGGCTTCACATCTCAGAGAAAGCAGGTGCTTATCTCCCCCACCCGCTGTTgtgtgatagaggagagctagctggtgggtgggaaacTAGCAAATCACCAAATTGggggaaatttatttattttataaggaaagaatatggcacatcTCAGTGATCTAAAAGTCAGCGACCAGGTAAGGTGGGCATTagtttgtgtagattcatgacataaaagCCCAATTAGGTCCATTTCTTTTCCAGGCTGAAACGGTCAAGTTGgggggtgtgaatacttatgcaaggcactgaaTACTAAGAATGTGCAGTGTTTTCAGCTGGTCTGCTACAGCCTTCAGTAACAGTactacagcacagagacagctggCCAATGCATAACAGATTATGCCTACAGAATACAGTAAAGGTTGTGAAATCATGAGGGatttttaatcctgttttttttttttgtacaaacaaCCTTGACCAAAAATTCACTCTTTTTCTCCATTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53076 True 1708 lncRNA 0.39 2 12154384 12156122

Neighbor

gene id symbol gene type direction distance location
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding upstream 11355 12134099 ~ 12143029 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding upstream 33871 12037501 ~ 12120513 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 338732 11812785 ~ 11815652 (+)
trnag-ccc NA coding upstream 562979 11591335 ~ 11591405 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 859404 11254621 ~ 11294980 (+)
dmac2l atp5s coding downstream 173928 12330050 ~ 12340992 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 247827 12403949 ~ 12418948 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding downstream 361431 12517553 ~ 12522746 (+)
frmd6 frmd6 coding downstream 417865 12573987 ~ 12594144 (+)
LOC113545271 NA coding downstream 444956 12601078 ~ 12603749 (+)
G44970 NA non-coding upstream 9982 12144117 ~ 12144402 (+)
G44891 NA non-coding upstream 22207 12131807 ~ 12132177 (+)
G44846 NA non-coding upstream 124278 12029634 ~ 12030106 (+)
G44843 NA non-coding upstream 127354 12026824 ~ 12027030 (+)
G44777 NA non-coding upstream 159241 11954989 ~ 11995143 (+)
G44972 NA non-coding downstream 126 12156248 ~ 12158228 (+)
G45040 NA non-coding downstream 159411 12315533 ~ 12315870 (+)
LOC113542444 NA non-coding downstream 333392 12489514 ~ 12499019 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 491773 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 518286 12674408 ~ 12674623 (+)
LOC113544122 NA other upstream 387970 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 409160 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 447379 11706935 ~ 11707005 (+)
dntt dntt other upstream 946522 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1545680 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 480198 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 483195 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 773437 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 826284 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 875928 13032050 ~ 13034350 (+)

Expression


Co-expression Network