G45153 (LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642)


Basic Information

Item Value
gene id G45153
gene name LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12647895 ~ 12648406 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53285
CCGTCCTTTCTCACTGTCTGGAAGATAGCAGTGGCGCGGAAATCCTCTTGCAGTGAAAGGTTTTCCTGGGTTTGGGTGCTCAGAGCCCTGTATGCCAGGGGGTATGTTGTATATTATGCGAATAGTTTTGCAGTCAGGGTGTCCTGGGAGTGAGTGAGGAATGACGTGGTACTCCATCTTCCCAGGTGGTTGGTTGCCCGTCTTCACACCATAGATCGTCTTGCATGTGGGACACTGCAAGCTGCCGTCTTTGTTGCCATTGTTGTACATGGCTACAAGGCACTGCAGATGGTACTGATGGCCGCACTGTGTCAGTCGACCCACTGACTCTGCGCGGGACACAGCACCCACACCTGGGCCTTTATAACCAGAGGGGCCAGCCAAAGGCTCCATACAGATAGTGCAGTC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase DTX1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53285 True 408 lncRNA 0.54 2 12647895 12648406

Neighbor

gene id symbol gene type direction distance location
LOC117596891 NA coding upstream 32688 12613042 ~ 12615207 (+)
LOC113545096 NA coding upstream 38056 12607529 ~ 12609839 (+)
LOC113545271 NA coding upstream 44146 12601078 ~ 12603749 (+)
frmd6 frmd6 coding upstream 53751 12573987 ~ 12594144 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding upstream 125149 12517553 ~ 12522746 (+)
trnat-ugu NA coding downstream 19408 12667814 ~ 12667886 (+)
abcb10 abcb10 coding downstream 54044 12702450 ~ 12712789 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 66225 12714631 ~ 12717322 (+)
ccsapb LOC108263641 coding downstream 70499 12718905 ~ 12723241 (+)
pdcd2 pdcd2 coding downstream 111291 12759697 ~ 12762641 (+)
LOC113542444 NA non-coding upstream 148876 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 332025 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 489667 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 491773 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 503493 12144117 ~ 12144402 (+)
G45170 NA non-coding downstream 26002 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 85026 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 162513 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 172450 12820856 ~ 12821389 (+)
G45376 NA non-coding downstream 221597 12870003 ~ 12870223 (+)
LOC117596823 NA other upstream 4591 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 11489 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 881481 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 902671 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 940890 11706935 ~ 11707005 (+)
spef1 spef1 other downstream 281153 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 334000 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 383644 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 849642 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1564963 14213369 ~ 14286542 (+)

Expression


Co-expression Network