LOC117596823


Basic Information

Item Value
gene id LOC117596823
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12639317 ~ 12643304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53286
CATTCATTCCCAATGGTTGTGCTAAACCACTACGGATGcgatatacttttggccactgACGCTCTGTGGCGCTGTTCCGAGCTTTTCCGCCGCCGGGAAATTAGAAATCGCCATTTTACTTCCGGccgagcaggagagagagatcgCAGGCTGCCGAATTACTGTTGTTCAGCATTATCGTAATTATTATTCAACGCTTTTTAGCTCAGCGATCAAAGGTCATCATGCCcaaaaaagctgtgtttttttcaggaACAGTTAAGGTTGTGTTCCGTAAGGGGCCACTGGGAGATCTCCTTCAGGAGTCAACTGAGGAGGCCAGGCTGATCAATCATAACCTGTCTCTGCTGGACGAGTCGGcaccagtgaaggaggagtttgTCAGACAAAATGCTCTGACTGTGGTCCGTCAGAGAGGAgAGatggatgaagatgatgagttGGAGAGCGCAATGCTGAACATCTCCCCCTCCAAGCTACGGGTGCAGTGTAAGTATTTCTGTCTGTACTGACTGCAGGTAGGGAATTTATTGTGTTTCAAATCATTTTCTGTCATATATTttacaccatcatcatcatcatcgccatcatcCTCAGCTGCTGAACTGAGACAGTCTACGGAAAAGATAATTGCTAATAGAGGAATGGTTCTCTGTTCAGGAGACAGCAGCATTACAGACAGCTCTCCAGCGTGCAGGACACTTACTTTTGAGAAATGTGGCAAAGATGAAGATCTCTCATCTTCAGAGACCACTTCATACAGTGTCCCACACAGCTGAGGCATCACTTGAGCCATTCTCCCCTTGGTTCTTCAGTGTGCAGCCCACCGCCTCTGCAACAGACAGtCACAATCAGGCATATCAGCCCTTCCTAAGATGCCCTCCTCCACAACCTCCTGGCTACGATCATGATGTCCGCCAGTGGAAGTGTTCCCATTAGCAGAGGATCTGGATGAAGACAGAGCTGGAATCCATGAGTCTATGCCTAGGGTTGCCGCCTGTGAGATATATCTTTTGCTTATATCTTTCACTTGGGATGAATATTTAACTAATGTAgatatgttttgtttgttttttttttactttattttacagggtaattaagtttatattaatatgtatatatgagcagacttatg
>XR_004577794.1
ccagggatCTGTAATCGCGggatcacactgtacacatgGCGATAGTCACATAGGCGATAAGccataaaacagtaaaaaattgCTAATTGTTTAATAACAATGTCGATTTATATCGTGACCTAAGTAAGGCCTGGGGGAAAGTCCCACCAACTATTGTTTCGATTTAGATTTTTACATGCGCATCGTTCATGTCCTAGACCTGAAAAACATTTGCGCCCAACGTGGGGCTCGAACCCACGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGCCGGGCTGATGGTTGAGCGTGCTAAAAAATGTATCTAAAAGCCTCCCCTACCTCGACCTACGAAGACGACTCAAAGGTGAGTGCCGCTACCTGGCGAATAACACAGAGTAGTAGAGCTAACTCGTGAGCAGCACTGTGAATGAAGCTAATAATGTTAGCAATGCTAACGAAGGAAACCAACTTGATGCTAGGGGGCGGAGGCCGGGGATTGTTTCGCTAAACGGCCCTAAACCGATTCCCATTCATTCCCAATGGTTGTGCTAAACCACTACGGATGcgatatacttttggccactgACGCTCTGTGGCGCTGTTCCGAGCTTTTCCGCCGCCGGGAAATTAGAAATCGCCATTTTACTTCCGGccgagcaggagagagagatcgCAGGCTGCCGAATTACTGTTGTTCAGCATTATCGTAATTATTATTCAACGCTTTTTAGCTCAGCGATCAAAGGTCATCATGCCcaaaaaagctgtgtttttttcaggaACAGTTAAGGTTGTGTTCCGTAAGGGGCCACTGGGAGATCTCCTTCAGGAGTCAACTGAGGAGGCCAGGCTGATCAATCATAACCTGTCTCTGCTGGACGAGTCGGcaccagtgaaggaggagtttgTCAGACAAAATGCTCTGACTGTGGTCCGTCAGAGAGGAgAGatggatgaagatgatgagttGGAGAGCGCAATGCTGAACATCTCCCCCTCCAAGCTACGGGTGCAGTGAGACAGCAGCATTACAGACAGCTCTCCAGCGTGCAGGACACTTACTTTTGAGAAATGTGGCAAAGATGAAGATCTCTCATCTTCAGAGACCACTTCATACAGTGTCCCACACAGCTGAGGCATCACTTGAGCCATTCTCCCCTTGGTTCTTCAGTGTGCAGCCCACCGCCTCTGCAACAGACAGtCACAATCAGGCATATCAGCCCTTCCTAAGATGCCCTCCTCCACAACCTCCTGGCTACGATCATGATGTCCGCCAGTGGAAGTGTTCCCATTAGCAGAGGATCTGGATGAAGACAGAGCTGGAATCCATGAGTCTATGCCTAGGGTTGCCGCCTGTGAGATATATCTTTTGCTTATATCTTTCACTTGGGATGAATATTTAACTAATGTAgatatgttttgtttgttttttttttactttattttacagggtaattaagtttatattaatatgtatatatgagcagacttatgtgtgtgtatgtgtgtatgtgtttcttcACTATTATTGCTTTTGGTTTCACTGTTCTATtgaagtgtttaaaatgcaaataataataataaaaaaaaaggtaaacacTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53286 False 1138 TUCP 0.45 7 12639836 12643195
XR_004577794.1 True 1595 lncRNA 0.45 7 12639317 12643304

Neighbor

gene id symbol gene type direction distance location
LOC117596891 NA coding upstream 24110 12613042 ~ 12615207 (+)
LOC113545096 NA coding upstream 29478 12607529 ~ 12609839 (+)
LOC113545271 NA coding upstream 35568 12601078 ~ 12603749 (+)
frmd6 frmd6 coding upstream 45173 12573987 ~ 12594144 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding upstream 116571 12517553 ~ 12522746 (+)
trnat-ugu NA coding downstream 24510 12667814 ~ 12667886 (+)
abcb10 abcb10 coding downstream 59146 12702450 ~ 12712789 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 71327 12714631 ~ 12717322 (+)
ccsapb LOC108263641 coding downstream 75601 12718905 ~ 12723241 (+)
pdcd2 pdcd2 coding downstream 116393 12759697 ~ 12762641 (+)
LOC113542444 NA non-coding upstream 140298 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 323447 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 481089 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 483195 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 494915 12144117 ~ 12144402 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 4591 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 31104 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 90128 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 167615 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 177552 12820856 ~ 12821389 (+)
trnay-gua NA other upstream 2911 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 872903 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 894093 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 932312 11706935 ~ 11707005 (+)
dntt dntt other upstream 1431455 11099593 ~ 11207862 (+)
spef1 spef1 other downstream 286255 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 339102 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 388746 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 854744 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1570065 14213369 ~ 14286542 (+)

Expression


Co-expression Network