G45170


Basic Information

Item Value
gene id G45170
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12674408 ~ 12674623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53325
TCCAGATTACATAGTCCACATGAATGAAATGTGCTTTTCTTACAATTTGCTTTTTTATTGGTGCTTCAgctttcagttttaaatatttcaaaatcagtggctgtttattaatattattaatgaatcCGTTCCTTGTAATGAAACCGCATGTAGGAGATGGGTATTTATGAAaccatttatatattttgggagaaaaaaaaaaaaaaaagaactgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53325 True 216 lncRNA 0.29 1 12674408 12674623

Neighbor

gene id symbol gene type direction distance location
trnat-ugu NA coding upstream 6522 12667814 ~ 12667886 (+)
LOC117596891 NA coding upstream 59201 12613042 ~ 12615207 (+)
LOC113545096 NA coding upstream 64569 12607529 ~ 12609839 (+)
LOC113545271 NA coding upstream 70659 12601078 ~ 12603749 (+)
frmd6 frmd6 coding upstream 80264 12573987 ~ 12594144 (+)
abcb10 abcb10 coding downstream 27827 12702450 ~ 12712789 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 40008 12714631 ~ 12717322 (+)
ccsapb LOC108263641 coding downstream 44282 12718905 ~ 12723241 (+)
pdcd2 pdcd2 coding downstream 85074 12759697 ~ 12762641 (+)
zgc:153169 LOC108263419,LOC108426824,LOC107725444,LOC107666437 coding downstream 94380 12769003 ~ 12774087 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding upstream 26002 12647895 ~ 12648406 (+)
LOC113542444 NA non-coding upstream 175389 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 358538 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 516180 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 518286 12154384 ~ 12156122 (+)
LOC117596851 NA non-coding downstream 58809 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 136296 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 146233 12820856 ~ 12821389 (+)
G45376 NA non-coding downstream 195380 12870003 ~ 12870223 (+)
G45453 NA non-coding downstream 285467 12960090 ~ 13031136 (+)
LOC117596823 NA other upstream 31104 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 38002 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 907994 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 929184 11682864 ~ 11745224 (+)
spef1 spef1 other downstream 254936 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 307783 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 357427 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 823425 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1538746 14213369 ~ 14286542 (+)

Expression


Co-expression Network