LOC113539135


Basic Information

Item Value
gene id LOC113539135
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12631213 ~ 12633418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53537
cttttccactaTAGCtgcagtcatcatcatcatgaaagtttggattgtgtgtgtgctgctgtgtgctgcctTTACACTGAGGACCGCTGCAGCTGCAGCAATTGAGATTGAGCCTGAGCAGAATCAGAAACTTCCAGAGGAAGCTACTGAGCTGGTTGTTGAGAAGTTGATTGATGCAGCTGAAGATAAGGAGGAAGCTCTCAGACAAAATGCTGTTGAAGATAAGTCAGGCTACTGTCCAACTGGCTGGTTTAGACACAGAACACGCTGCTTTCTGCTTGTGAGGTCAACTCTGTCCTGGCAAAATGCTGAGGCACGGTGTGTAGCTGAACAGGCAAGTTTGGCATCTGTACACAACGCTGATGAATATAAGTTCCTGCAGAGTTTGCTTCAAATTGCTGGCATATCACAGGCTTGGATTGGCGCGTACAACTTCCAGG
>XM_026934693.1
AATTGAGATTACTGTGAACCATAAATGAATTGGGGGAACATGTTCCTGGATGCTCAGCGATGTTTCCTGTTGGACTGAGTTCAACTTATGGGATGGACTGGTATAAATGGCACCCTGGGACCTTCATTCAACAGATTACCCTGAACCTGCCAGAGAGATACGTCCTGAGACCTACAAATTGCtgcagtcatcatcatcatgaaagtttggattgtgtgtgtgctgctgtgtgctgcctTTACACTGAGGACCGCTGCAGCTGCAGCAATTGAGATTGAGCCTGAGCAGAATCAGAAACTTCCAGAGGAAGCTACTGAGCTGGTTGTTGAGAAGTTGATTGATGCAGCTGAAGATAAGGAGGAAGCTCTCAGACAAAATGCTGTTGAAGATAAGTCAGGCTACTGTCCAACTGGCTGGTTTAGACACAGAACACGCTGCTTTCTGCTTGTGAGGTCAACTCTGTCCTGGCAAAATGCTGAGGCACGGTGTGTAGCTGAACAGGCAAGTTTGGCATCTGTACACAACGCTGATGAATATAAGTTCCTGCAGAGTTTGCTTCAAATTGCTGGCATATCACAGGCTTGGATTGGCGCGTACAACTTCCAGggAACATGGTGGTGGATTGACAGAGCTCGGTTCTCCTACACTAACTGGTACACAGTGAGCAGTGTGACCAGCTACCCATGTGGTTTCATGAGGAGCAATGTTGGCTGGTCTAACACTAACTGTGCAAATGGATATGCATACTTCTGTTCTATTGACCCAAGCATATGCTAATGTacataaatgagtaaatgtataTAGGTAAATCAAAGATCATTTGATATCATTATGTGAAACACAAATTCTTATTTGTTTTGGGAGCCCTTGATTGATGAACATTGTTTTTATgttgcttaataaataaaacaaccatTTTCCTACTTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53537 False 440 TUCP 0.47 6 12631813 12633015
XM_026934693.1 True 930 mRNA 0.43 9 12631213 12633418

Neighbor

gene id symbol gene type direction distance location
LOC113537655 LOC108262224 coding downstream 78141 12545878 ~ 12553072 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding downstream 123617 12485749 ~ 12507596 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding downstream 145587 12472527 ~ 12485626 (-)
sav1 sav1,LOC106517965,LOC107602930 coding downstream 199569 12422281 ~ 12431644 (-)
map4k5 map4k5 coding downstream 229726 12358272 ~ 12401487 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding upstream 11197 12644615 ~ 12663466 (-)
trnak-cuu_2 NA coding upstream 35075 12668493 ~ 12668565 (-)
trnae-cuc_9 NA coding upstream 35402 12668820 ~ 12668891 (-)
zgc:66472 LOC108263827 coding upstream 41335 12674753 ~ 12683749 (-)
urb2 urb2,LOC107552917 coding upstream 52881 12686299 ~ 12696128 (-)
LOC117596890 NA non-coding downstream 1957 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 2825 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 3732 12627046 ~ 12627481 (-)
G45249 NA non-coding downstream 261864 12368513 ~ 12369349 (-)
G45236 NA non-coding downstream 327672 12290327 ~ 12303541 (-)
G45305 actc1,LOC105021204 non-coding upstream 81266 12714684 ~ 12717329 (-)
G45324 LOC108263641 non-coding upstream 86211 12719629 ~ 12721353 (-)
G45323 NA non-coding upstream 88183 12721601 ~ 12724180 (-)
trnal-cag NA non-coding upstream 100782 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 141027 12774445 ~ 12776116 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 96998 12524636 ~ 12534215 (-)
nin nin other downstream 166150 12435109 ~ 12465063 (-)
tmem254 tmem254 other downstream 478691 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 609745 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 922529 11708614 ~ 11708684 (-)
trnae-cuc_8 NA other upstream 5834 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 6112 12639530 ~ 12639602 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 372068 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 796579 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1548473 14181891 ~ 14192243 (-)

Expression


Co-expression Network