si:ch211-223p8.8 (si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922)


Basic Information

Item Value
gene id si:ch211-223p8.8
gene name si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13032050 ~ 13034350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53738
CAGTGAGCCAACAAAGATGGTGGATTCTCCTAAAAGCACAAAAGAGAACAGTATTTCCAGTCTCCGTGACTCTCCCACTGTTGAGCAGCTGGAGGAAATCCTACATGGAGGTCAGTTATCATGTAACCATGTTGATGAAGTGTGGCCCAATCTGTTTCTGGGAGACATGTATATGTCTCATGACAGATATGGACTTTGGAGACTTGGTATTACTCATGTTCTGAATGCTGCTCATGGGAAAATGTGTTGCAAAGTATATTCATCAGGCTCTCAGCACTCGCGGAGTATCACTTTTTCCTCAGCCAGAGTCTTTGTGCACTGTGCTGTTGGTGTAAGCCGTTCTGCTGCCCTG
>XM_026937865.2
TTTTGGGCACATTCCACTCCTGAAGTCTAAGGTCATGTTgacataataaatgaatgaaacagtcATTACGATGGTGATAGTGATTCTCCCAAAGGAAAATGGTCAGGGGAACTCGATAAGGGCATGTTCAAAATGGCATAAGAACATAAGCTTGGATCAAATGCAAATACAGTGGCATCTACTGGAGGCTAGGAGTTAATGCAGTGATCACACACCTGGCAGTGTCATTCAGTGAGCCAACAAAGATGGTGGATTCTCCTAAAAGCACAAAAGAGAACAGTATTTCCAGTCTCCGTGACTCTCCCACTGTTGAGCAGCTGGAGGAAATCCTACATGGAGGTCAGTTATCATGTAACCATGTTGATGAAGTGTGGCCCAATCTGTTTCTGGGAGACATGTATATGTCTCATGACAGATATGGACTTTGGAGACTTGGTATTACTCATGTTCTGAATGCTGCTCATGGGAAAATGTGTTGCAAAGGTAGTGATGATTTCTATGGCACCACAGTGCAATACTATGGAGTAGCAGCTAATGACCTGCCTACTTTTGATATTTCACCTTTCTTCTACCCTTCTGCACAGTATATTCATCAGGCTCTCAGCACTCGCGGAGCCAGAGTCTTTGTGCACTGTGCTGTTGGTGTAAGCCGTTCTGCTGCCCTGGTCTTGgcttatttaatgatttatcaCAACTACACTTTAGTGGATGCTATCCTGAAAGTTAATGAGAAGAGGTGGATTTTTCCAAATCGAGGATTTCTCAAGCATCTTATAAATCTGGATTCTGAACTAAAGAGCAAATCTCAAGCTCCTTAATAACATGTTGGTGCAGTACCACTAACTGCCACTGGGGGGCCACAACTCATCTCTGGGTCTCATCTCTGGGCACTGCTGTTCCTAAACATGAAATACCCCTCATTATC
>XM_034303041.1
TTTTGGGCACATTCCACTCCTGAAGTCTAAGGTCATGTTgacataataaatgaatgaaacagtcATTACGATGGTGATAGTGATTCTCCCAAAGGAAAATGGTCAGGGGAACTCGATAAGGGCATGTTCAAAATGGCATAAGAACATAAGCTTGGATCAAATGCAAATACAGTGGCATCTACTGGAGGCTAGGAGTTAATGCAGTGATCACACACCTGGCAGTGTCATTCAGTGAGCCAACAAAGATGGTGGATTCTCCTAAAAGCACAAAAGAGAACAGTATTTCCAGTCTCCGTGACTCTCCCACTGTTGAGCAGCTGGAGGAAATCCTACATGGAGGTCAGTTATCATGTAACCATGTTGATGAAGTGTGGCCCAATCTGTTTCTGGGAGACATGTATATGTCTCATGACAGATATGGACTTTGGAGACTTGGTATTACTCATGTTCTGAATGCTGCTCATGGGAAAATGTGTTGCAAAGGTAGTGATGATTTCTATGGCACCACAGTGCAATACTATGGAGTAGCAGCTAATGACCTGCCTACTTTTGATATTTCACCTTTCTTCTACCCTTCTGCACAGTATATTCATCAGGCTCTCAGCACTCGCGGAGCCAGAGTCTTTGTGCACTGTGCTGTTGGTGTAAGCCGTTCTGCTGCCCTGGTCTTGgcttatttaatgatttatcaCAACTACACTTTAGTGGATGCTATCCTGAAAGTTAATGAGAAGAGGTGGATTTTTCCAAATCGAGGATTTCTCAAGCATCTTATAAATCTGGATTCTGAACTAAAGAGCAAATCTCAAGGTGACGTTCCTGTTCATTGAGAAAACTAGCAACAGATATATTAGTATGTGTAAAACAGAGACTACGCAAAGATGCTTGAACAGACAAATGACAGCATGTTGAATGAGTACATTAATTTTGCCAAAATTCAGCCTAATCTGCAATTAATTCTGCAGTTGCACTTAAcaaatatgtacattatatggccaaaggtat

Function

symbol description
si:ch211-223p8.8 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: dual specificity protein phosphatase 13-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
TU53738 False 352 TUCP 0.46 4 13032279 13033248
XM_026937865.2 False 925 mRNA 0.43 4 13032050 13034350
XM_034303041.1 True 1005 mRNA 0.41 3 13032050 13033588

Neighbor

gene id symbol gene type direction distance location
cfap43 cfap43 coding upstream 50672 12957156 ~ 12981378 (+)
adam8a adam8 coding upstream 102996 12920496 ~ 12929054 (+)
msx3 msx3,LOC108263347 coding upstream 120436 12909723 ~ 12911614 (+)
fuom fuom,LOC107676595 coding upstream 157065 12871072 ~ 12874985 (+)
echs1 echs1,LOC107601864,LOC107743519,LOC107676592,LOC107666378 coding upstream 163598 12863910 ~ 12868452 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding downstream 310 13034660 ~ 13039337 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding downstream 5857 13040207 ~ 13055375 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding downstream 195312 13229662 ~ 13236979 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding downstream 260882 13295232 ~ 13310269 (+)
LOC113543512 gsto1,LOC100304822 coding downstream 280245 13314595 ~ 13317625 (+)
G45453 NA non-coding upstream 914 12960090 ~ 13031136 (+)
G45459 NA non-coding upstream 14450 13011946 ~ 13017600 (+)
G45376 NA non-coding upstream 161827 12870003 ~ 12870223 (+)
G45360 NA non-coding upstream 210661 12820856 ~ 12821389 (+)
G45351 NA non-coding upstream 220800 12810919 ~ 12811250 (+)
G45473 NA non-coding downstream 17890 13052240 ~ 13052529 (+)
G45508 NA non-coding downstream 61321 13095671 ~ 13095881 (+)
G45592 NA non-coding downstream 277327 13311677 ~ 13312080 (+)
G45594 NA non-coding downstream 278644 13312994 ~ 13313221 (+)
G45640 NA non-coding downstream 341449 13375799 ~ 13375999 (+)
col17a1b LOC108263226,LOC108426809 other upstream 26727 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 94748 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 388746 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 395644 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 1265636 11745748 ~ 11766414 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 463698 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1179019 14213369 ~ 14286542 (+)
cgas NA other downstream 1327017 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1938218 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2759056 15793406 ~ 15797204 (+)

Expression


Co-expression Network