G45592


Basic Information

Item Value
gene id G45592
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13311677 ~ 13312080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53888
AGCAAATCTGTAAACCTTTGAATGTTTACGATCTGAGACATGAATGAGGAAATGCAGCATTTTCATGATGATTTGACAAAATTGAGTGCTGATAATTGTGTGGTAAGTCACCACTGTTTACTTTACACCAGACCATGATTCAGATATGAAGCACATCTGCAGATGTGTGACGTAGGAACAGAGAGCATAAAGAGTTTTAGTGTTGTGCCATCAAGAGCCCCCAGAACAGCTAAGATTGTGAGTCTCTGGAACTGTGCTGGAGAGATGGACACGTTTCTTCCGAAACATTCCATCAGTTTgtgttttgatggtggtggtggtctGACATGACAATTCCACAGGCGTTCAATTGTTATAAGATCTGTTGACTGTGAAGATCATAGcttatgatttacatcattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53888 True 404 lncRNA 0.40 1 13311677 13312080

Neighbor

gene id symbol gene type direction distance location
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding upstream 1408 13295232 ~ 13310269 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding upstream 74698 13229662 ~ 13236979 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding upstream 256302 13040207 ~ 13055375 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding upstream 272340 13034660 ~ 13039337 (+)
cfap43 cfap43 coding upstream 330299 12957156 ~ 12981378 (+)
LOC113543512 gsto1,LOC100304822 coding downstream 2515 13314595 ~ 13317625 (+)
calhm3 calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682 coding downstream 13813 13325893 ~ 13329493 (+)
calhm1 LOC108263121,LOC108263394 coding downstream 17834 13329914 ~ 13333161 (+)
LOC113543782 LOC108263125 coding downstream 21261 13333341 ~ 13338334 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding downstream 27178 13339258 ~ 13346106 (+)
G45508 NA non-coding upstream 215796 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 259148 13052240 ~ 13052529 (+)
G45453 NA non-coding upstream 280541 12960090 ~ 13031136 (+)
G45459 NA non-coding upstream 294077 13011946 ~ 13017600 (+)
G45376 NA non-coding upstream 441454 12870003 ~ 12870223 (+)
G45594 NA non-coding downstream 914 13312994 ~ 13313221 (+)
G45640 NA non-coding downstream 63719 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 209759 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 210826 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 332040 13644120 ~ 13645338 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 277327 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 306354 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 374375 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 668373 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 675271 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 185968 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 901289 14213369 ~ 14286542 (+)
cgas NA other downstream 1049287 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1660488 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2481326 15793406 ~ 15797204 (+)

Expression


Co-expression Network