G45616


Basic Information

Item Value
gene id G45616
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13308094 ~ 13310240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53928
TACAATAAACCAGTGAACTCAAGAACATTTCAGTTAAGAAAATTTAACAACTTATCAGTATGTGTCAAACATTATCTGATGAAATAACATAATGAACTGTTTTTTCAACCTTCTGTGCAGAGCTGATTATCAAAAAGATCCTACATTCTCAAGAACAACAGAGAACCAAGATTAATATAGTGACGTTCTTATATCCCCAAACTGACACTTAACAGGCCTTCCTACAGGCATTGCACTGATGACACTATGACACTTCTTTCATTtaccaaaaaagaaaacaaaaacaaaaataacttcaGCACCTTCGGTTTCCTAATCCACAGCCACACAACAATTTGCCAGTCCTGGGCTTGTTGTAATGGACAACTGTTAAATTCATGGATAGGAGGAGGATTTATGTTATAAAGAGCTTTCCAGGGCTAGATTCAGCCAGTTTTTTGTTTCGATTCTGTGACTTGTTTCATTCAGTAATTCTGCCTTTCAAAAATATCACTTCTATTACACGCTGACTTAATTTTATAGTCCACCGTTCTTTCATGGCAGCAAAAATCCAACATTCACAGTGAACCTCTAAAGTGCAGATGCTGAGCAATAGAAAGACACCTAATCCACATACAATCGGCCCATACAGAGTAGAATACgttgattaataataaataaatacctgtgtatttaaagcagtggttctcaaaccaGTACTCATGGCCCCCAAAAcagtaaaattttttttaacacatggCTATCAATCAATTAATGGTTGAATATATTGCTGCTTGCATTATAGTTAGGTGCACTTTTAGCTTCACCAGTCTTTCATTAAATATACCAATGCAAAATGCTTTCATTAACGTGCGTTCACATTAGCTCACAATTTGACAAACACTAATTACTATTTAAATATACAGCCTAGATGACAAAGCATACTACAGATTTTAAACTCACCATTATACTCTCTGATTTCTCCTCAGTTGTCTCCTGCAGCAGACTTGTGAGCTGGCTTAAGTACTTCTGATTCTCCTCCAGTAGATGGTTGAGCGTTTCACTGGAAAACAGGATGGTTTAAAGTCAGTTATGGAATCAACACACAGCTGGTTCTGTGTTAACTGAAATGTGTGCAGTGAGGAGTTACCCGTCATGTGGAGCTGGCAGGGACATGGGCAGGCGTGGAGAGCAGGACTGCTGAGGATGCTGAGGCCAGGCCGAGAGAGAAGGGGATACATCTGCACTGTGGCTACGGGTGGTGTTCTGTGCCTGCAAGAATACACACATTCCCTACTTTCTTAGCACAGCACCATTATGAAGCAGCCTAACATGCATTACAGAGATGTAATACAATGAGTTGTTTGAATAATCTGTTAGTGACtcaatttgtatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53928 True 1376 lncRNA 0.39 2 13308094 13310240

Neighbor

gene id symbol gene type direction distance location
plaua NA coding downstream 15895 13288107 ~ 13292199 (-)
vcla vcl,LOC108426801,LOC107666493,LOC107726962,LOC107655431 coding downstream 28316 13237216 ~ 13279778 (-)
adka adk,adka,LOC107601874,LOC108426804,LOC107666490,LOC107743514,LOC107655429 coding downstream 78553 13097794 ~ 13229541 (-)
kat6b kat6b,LOC107743589 coding downstream 216186 13054415 ~ 13091908 (-)
erlin1 erlin1,LOC108263345,LOC108426813,LOC107725471,LOC107666491,LOC107743516,LOC107601865,LOC107676597 coding downstream 351178 12945709 ~ 12956916 (-)
itprip LOC108263646 coding upstream 7992 13318232 ~ 13323689 (-)
tial1 tial1 coding upstream 55885 13366125 ~ 13374858 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding upstream 95028 13405268 ~ 13417671 (-)
ret ret coding upstream 126896 13437136 ~ 13459577 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding upstream 154801 13465041 ~ 13497961 (-)
G45586 NA non-coding downstream 57717 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 401619 12906274 ~ 12906475 (-)
G45395 NA non-coding downstream 439638 12866108 ~ 12868456 (-)
G45415 NA non-coding downstream 446042 12858974 ~ 12862052 (-)
G45409 NA non-coding downstream 461381 12846507 ~ 12846713 (-)
G45622 NA non-coding upstream 2710 13312950 ~ 13313156 (-)
G45755 NA non-coding upstream 154256 13464496 ~ 13464739 (-)
LOC113543535 NA non-coding upstream 322515 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 873528 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 979316 14289556 ~ 14291633 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 276898 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 668492 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 668771 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 674676 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 773879 12524636 ~ 12534215 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 119757 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 871651 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1469616 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2102673 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 3134456 16444696 ~ 16456255 (-)

Expression


Co-expression Network