G45622


Basic Information

Item Value
gene id G45622
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13312950 ~ 13313156 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53934
cttactttataattagtcagtaacgccatcattttgtccattcagGCCGAGAACTTGCACGAAAACAAGAGGCGGGATTTATCGAAcgaacctatcacatccaatcataaccgatcacatccaatcataaccgatcatatccaatcataaccgatcacatccaatcataaccgatcacataaCCGATcgtatccaatcataaccgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53934 True 207 lncRNA 0.40 1 13312950 13313156

Neighbor

gene id symbol gene type direction distance location
plaua NA coding downstream 20751 13288107 ~ 13292199 (-)
vcla vcl,LOC108426801,LOC107666493,LOC107726962,LOC107655431 coding downstream 33172 13237216 ~ 13279778 (-)
adka adk,adka,LOC107601874,LOC108426804,LOC107666490,LOC107743514,LOC107655429 coding downstream 83409 13097794 ~ 13229541 (-)
kat6b kat6b,LOC107743589 coding downstream 221042 13054415 ~ 13091908 (-)
erlin1 erlin1,LOC108263345,LOC108426813,LOC107725471,LOC107666491,LOC107743516,LOC107601865,LOC107676597 coding downstream 356034 12945709 ~ 12956916 (-)
itprip LOC108263646 coding upstream 5076 13318232 ~ 13323689 (-)
tial1 tial1 coding upstream 52969 13366125 ~ 13374858 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding upstream 92112 13405268 ~ 13417671 (-)
ret ret coding upstream 123980 13437136 ~ 13459577 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding upstream 151885 13465041 ~ 13497961 (-)
G45616 NA non-coding downstream 2710 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 62573 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 406475 12906274 ~ 12906475 (-)
G45395 NA non-coding downstream 444494 12866108 ~ 12868456 (-)
G45415 NA non-coding downstream 450898 12858974 ~ 12862052 (-)
G45755 NA non-coding upstream 151340 13464496 ~ 13464739 (-)
LOC113543535 NA non-coding upstream 319599 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 870612 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 976400 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 1300385 14613541 ~ 14613818 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 281754 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 673348 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 673627 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 679532 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 778735 12524636 ~ 12534215 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 116841 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 868735 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1466700 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2099757 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 3131540 16444696 ~ 16456255 (-)

Expression


Co-expression Network