G45640


Basic Information

Item Value
gene id G45640
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13375799 ~ 13375999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53962
GGGGGAGCAAGAAATGAACACAAGAAATCTTAAGTGTCCCGCTTTTAATGCCCCATGTGACCTGAGTTCACCCTACTGGTTTAGTAACCTGGACATGTACACCATATAAAGCACTACATCTCTTTTTGGAACATGGGTAACACTATTTGAATTTTTCTTACAAAAGGAGGTTAAAGTGTGAACACTAGATATCATATTGgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53962 True 201 lncRNA 0.39 1 13375799 13375999

Neighbor

gene id symbol gene type direction distance location
pkd2l1 LOC108263119 coding upstream 9732 13359076 ~ 13366067 (+)
atoh7 atoh7 coding upstream 19367 13353569 ~ 13356432 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding upstream 29693 13339258 ~ 13346106 (+)
LOC113543782 LOC108263125 coding upstream 37465 13333341 ~ 13338334 (+)
calhm1 LOC108263121,LOC108263394 coding upstream 42638 13329914 ~ 13333161 (+)
bag3 bag3 coding downstream 725 13376724 ~ 13383343 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 9487 13385486 ~ 13404675 (+)
sec23ip sec23ip,LOC107655440 coding downstream 43949 13419948 ~ 13430260 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 212317 13588316 ~ 13633478 (+)
fancl fancl,LOC107585345 coding downstream 659639 14035638 ~ 14056463 (+)
G45594 NA non-coding upstream 62578 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 63719 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 279918 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 323270 13052240 ~ 13052529 (+)
G45453 NA non-coding upstream 344663 12960090 ~ 13031136 (+)
G45712 NA non-coding downstream 145840 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 146907 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 268121 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 513280 13889279 ~ 13889849 (+)
G45875 NA non-coding downstream 518143 13894142 ~ 13896535 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 341449 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 370476 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 438497 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 732495 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 739393 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 122049 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 837370 14213369 ~ 14286542 (+)
cgas NA other downstream 985368 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1596569 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2417407 15793406 ~ 15797204 (+)

Expression


Co-expression Network