pcbd1 (pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335)


Basic Information

Item Value
gene id pcbd1
gene name pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13498048 ~ 13501050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU54033
AAATACGGGTATGGGGACGTGTTTAATTCAgagcaggagagacagagaggcaggaAAGCAGTACTGCTCAGAGAAAACATGGCTGGTAAGATTCAGGTTCTGACTTTGGACGAGAGAGAGCAGCTCCTCCCGATGCTCCGCAACGCACAGTGGGCTGAAGTGGTGGGCAGGGATGCCCTCTATAAAGAGTTTGTTTTCAAAGACTTTAACCAGGCCTTTGGGTTCATGTCTAGAGTAGCACTACAGGCTGAGAAAATGGACCATCATCCCGAGTGGTTCAATGTTTACAATAAGGTTCACATCACTCTCAGCACACACGAGTGTGGAGGACTGTCTAAGCGTGACATTACTCTTGCTACTTTCATTGATCAAGTCTCAGTGTTGTGAAGATgactctctttctgtttctgtttcagatACAGACCAGGCCCCTTAGGTCTCACATTGCtgaattaaatgcatttattggGTGGTGTTTCCAGATACAAACTAATCCAAACCCAAATTGAAAATCTTTAATAGCCTGTTACACAGTCAGTAAAAACACAGGATACACTATCTGTAAATTAATAATCCTATGGTGATAATAGAGCTATCTGTACAGGATGGTCTCGGGTCTTCTGGCTGTAATCCAGTATCTTCTGTTCTGAAAAATATTGtgcctttattttttattcagcGTGCAGAGGGTATTGCTGTCCTTACAAATTGGTAGAGTGTCTCAACAATTGTGAAGCCTTCCACTGTTTCCAAAATAAAGCAGAGCTTTTGACCCA
>XM_026935703.2
TATCGTATGTTAGCCAATCGTAGCTCAGGAGGCGGGGTTTGTGGAAATACGGGTATGGGGACGTGTTTAATTCAgagcaggagagacagagaggcaggaAAGCAGTACTGCTCAGAGAAAACATGGCTGGTAAGATTCAGGTTCTGACTTTGGACGAGAGAGAGCAGCTCCTCCCGATGCTCCGCAACGCACAGTGGGCTGAAGTGGTGGGCAGGGATGCCCTCTATAAAGAGTTTGTTTTCAAAGACTTTAACCAGGCCTTTGGGTTCATGTCTAGAGTAGCACTACAGGCTGAGAAAATGGACCATCATCCCGAGTGGTTCAATGTTTACAATAAGGTTCACATCACTCTCAGCACACACGAGTGTGGAGGACTGTCTAAGCGTGACATTACTCTTGCTACTTTCATTGATCAAGTCTCAGTGTTGTGAAGATgactctctttctgtttctgtttcagatACAGACCAGGCCCCTTAGGTCTCACATTGCtgaattaaatgcatttattggGTGGTGTTTCCAGATACAAACTAATCCAAACCCAAATTGAAAATCTTTAATAGCCTGTTACACAGTCAGTAAAAACACAGGATACACTATCTGTAAATTAATAATCCTATGGTGATAATAGAGCTATCTGTACAGGATGGTCTCGGGTCTTCTGGCTGTAATCCAGTATCTTCTGTTCTGAAAAATATTGtgcctttattttttattcagcGTGCAGAGGGTATTGCTGTCCTTACAAATTGGTAGAGTGTCTCAACAATTGTGAAGCCTTCCACTGTTTCCAAAATAAAGCAGAGCTTTTGACCCAGTGA

Function

symbol description
pcbd1 Predicted to enable 4-alpha-hydroxytetrahydrobiopterin dehydratase activity. Predicted to act upstream of or within tetrahydrobiopterin biosynthetic process. Is expressed in lens; liver; and solid lens vesicle. Orthologous to human PCBD1 (pterin-4 alpha-carbinolamine dehydratase 1).

NR:

description
Pterin-4-alpha-carbinolamine dehydratase

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity molecular_function
GO:0004505 phenylalanine 4-monooxygenase activity molecular_function

KEGG:

id description
K01724 PCBD, phhB; 4a-hydroxytetrahydrobiopterin dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
TU54033 False 776 TUCP 0.43 4 13498092 13501046
XM_026935703.2 True 824 mRNA 0.43 4 13498048 13501050

Neighbor

gene id symbol gene type direction distance location
sec23ip sec23ip,LOC107655440 coding upstream 67788 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 93373 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 114705 13376724 ~ 13383343 (+)
pkd2l1 LOC108263119 coding upstream 131981 13359076 ~ 13366067 (+)
atoh7 atoh7 coding upstream 141616 13353569 ~ 13356432 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 87266 13588316 ~ 13633478 (+)
fancl fancl,LOC107585345 coding downstream 534588 14035638 ~ 14056463 (+)
soul2 NA coding downstream 692784 14193834 ~ 14197074 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 788332 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 795284 14296334 ~ 14328299 (+)
G45640 NA non-coding upstream 122049 13375799 ~ 13375999 (+)
G45594 NA non-coding upstream 184827 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 185968 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 402167 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 445519 13052240 ~ 13052529 (+)
G45712 NA non-coding downstream 20789 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 21856 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 143070 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 388229 13889279 ~ 13889849 (+)
G45875 NA non-coding downstream 393092 13894142 ~ 13896535 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 463698 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 492725 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 560746 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 854744 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 861642 12636320 ~ 12636406 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 712319 14213369 ~ 14286542 (+)
cgas NA other downstream 860317 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1471518 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2292356 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 2569664 16070714 ~ 16075650 (+)

Expression


Co-expression Network