G45755


Basic Information

Item Value
gene id G45755
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13464496 ~ 13464739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU54100
CACTAATGCAAAATCAGGGAAATTACACTGCTGGCTTTAAGGTTTGTTCGCAAGTGGACCTTCATCAAATAAGGCAAAGTCAGTACAAGCTTCATTTATTAACTCTGATAAAAGAAATTTGAATAATAGATGTTTAACAGCATCTCCAATCTCTCTCCCAGCTGTGAGTGGTTATCAAGGGAGCGTTAGGCAGAATGGAAAGATTTAATTTCTCTGCATGAGAGTTCTCAGAAGCAGCTTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54100 True 244 lncRNA 0.38 1 13464496 13464739

Neighbor

gene id symbol gene type direction distance location
ret ret coding downstream 4919 13437136 ~ 13459577 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding downstream 46825 13405268 ~ 13417671 (-)
tial1 tial1 coding downstream 89638 13366125 ~ 13374858 (-)
itprip LOC108263646 coding downstream 140807 13318232 ~ 13323689 (-)
plaua NA coding downstream 172297 13288107 ~ 13292199 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding upstream 302 13465041 ~ 13497961 (-)
sgpl1 sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334 coding upstream 37975 13502714 ~ 13517097 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding upstream 66921 13531660 ~ 13536867 (-)
rel rel coding upstream 80787 13545526 ~ 13554549 (-)
papolg papolg coding upstream 92134 13556873 ~ 13571810 (-)
G45622 NA non-coding downstream 151340 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 154256 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 214119 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 558021 12906274 ~ 12906475 (-)
G45395 NA non-coding downstream 596040 12866108 ~ 12868456 (-)
LOC113543535 NA non-coding upstream 168016 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 719029 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 824817 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 1148802 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 1149777 14614516 ~ 14614764 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 29010 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 433300 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 824894 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 825173 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 831078 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 717152 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1315117 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1948174 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2979957 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 3514392 16979131 ~ 16982729 (-)

Expression


Co-expression Network