G46217


Basic Information

Item Value
gene id G46217
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14286650 ~ 14288287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU54602
GCTAATATAAACCTAACTGTAAAATCAGCAAAGTATTTTTATCACAAGGAAACTGTTTGTACTTTATAAttcaaaatgtttcaaaagaTTATCTGCTTTCAGATTTAGGATGTGCATCAACTTATCTGATATGTACATAGTGTAGCTCATAAAGCTAATTTTCAATAATTTTCAAACACTGTTAATTTCTAAGAGTGTTTCTTTCTAGTTACTATTTCTGCCATATCCTTTTCCTTTTGCTACTTGGGtagaaaatatggaaaatatcatttttagaTTTGCCATATTGATAAATGTGTTGGTGTATTACTTTGTAGGAATGTGATTCCCAAATCAAATGCAACAGCAGTATTAGCAATAGGTCTGATCAGTGTGTCACTTGTACTTAATGAAAACCTTGGCTTATTCCAGATAGAATGTATAGTATGGAactgttttgggtttttttgttttgttttgtgttattgttttttttttttttggactataAGTGTCGTTCAGTATTAGTTAGCTAGTTCATTTGTGGTTTTGTTGAAGAGGTTTACTTAAGACTTGAAGGCAAACAGGGTTAAAGTTAGATCCAGTTAATttataatgcaataataataattaatatgtacGTACAGTGTTCTCTCTTATTTGTCctgaaaataatacactttacaCGACTTTATAGCTTAGCTGCATATTTCAGTCAGTAAAGGAAAAGATTTAGGTGGCGTTtctactttcttttcttttttttttttttttttttgctttatttaacatctacaCAACAGCAGTAGCTTTGGCATTCAAAATTAACACTCTACTATCACCGAATTTCTGTCATGTTACAACCTTCAAAATGCCAGTTACACATTTTACTTACGTTCTCTAAGAGTTATTATTCTGTCAGAGACAGGCTACTACACTGATACAGTTCTCATGAGCTGTGCTAAAAGGCCAGTGCCAGTTACAGTAATCATTTTTAGTAATGTACTTTGCTGCTGTTCCTTTATATACACAATAATCACACTGATTCAAAGCAAGGACAAGCACAACTTATTATTCACACCATACTTATGAATAACATTTCCCCCGCTTATATCCTAACCAGAGGCTCATCTGCTGGTGTTTTTTAATAAGATGAGAGCATTTCTGAACACACAAATGTGATACTTACATGGTGGATTGCtgatgtacatatatacatatatgaaaatgtatttatattttttgttgttactGTATATCTGTTAACTATATTTTCATAGATACTGTATGATGTTTGGGTCCTCATTTGTGTTTTGAGTAAAATGCCCTTTGGTTTGCTAGTTCgcatgaaattattttaatataagaaTTGACTTCTGTTTATTATATAATGGTGGGcactgaagaaaagcagctgtGGAATTAGACCTCTTAGATCATTGCATGTTTTTCAGGGGAGTACTGCTGGATTTTTCGATTCTTTAATGATGGTTCTAGTCACAGGTTAAGTCCAAATCAATGGTTTACTATACATTTGAGACAATATGAGAAAGAATTGTTTGCTTTATGTACTAAAGTATTTTGTTCAGGTGATTCAAGTGTATATCAGAGTACATTTTTGCTACTcaaacttaaataaaaatgatctttGCTAAGGCC
>TU54604
catctacaCAACAGCAGTAGCTTTGGCATTCAAAATTAACACTCTACTATCACCGAATTTCTGTCATGTTACAACCTTCAAAATGCCAGTTACACATTTTACTTACGTTCTCTAAGAGTTATTATTCTGTCAGAGACAGGCTACTACACTGATACAGTTCTCATGAGCTGTGCTAAAAGGCCAGTGCCAGTTACAGTAATCATTTTTAGTAATGTACTTTGCTGCTGTTCCTTTATATACACAATAATCACACTGATTCAAAGCAAGGACAAGCACAACTTATTATTCACACCATACTTATGAATAACATTTCCCCCGCTTATATCCTAACCAGAGGCTCATCTGCTGGTGTTTTTTAATAAGATGAGAGCATTTCTGAACACACAAATGTGATACTTACATGGTGGATTGCtgatgtacatatatacatatatgaaaatgtatttatattttttgttgttactGTATATCTGTTAACTATATTTTCATAGATACTGTATGATGTTTGGGTCCTCATTTGTGTTTTGAGTAAAATGCCCTTTGGTTTGCTAGTTCgcatgaaattattttaatataagaaTTGACTTCTGTTTATTATATAATGGTGGGcactgaagaaaagcagctgtGGAATTAGACCTCTTAGATCATTGCATGTTTTTCAGGGGAGTACTGCTGGATTTTTCGATTCTTTAATGATGGTTCTAGTCACAGGTTAAGTCCAAATCAATGGTTTACTATACATTTGAGACAATATGAGAAAGAATTGTTTGCTTTATGTACTAAAGTATTTTGTTCAGG
>TU54606
GCTAATATAAACCTAACTGTAAAATCAGCAAAGTATTTTTATCACAAGGAAACTGTTTGTACTTTATAAttcaaaatgtttcaaaagaTTATCTGCTTTCAGATTTAGGATGTGCATCAACTTATCTGATATGTACATAGTGTAGCTCATAAAGCTAATTTTCAATAATTTTCAAACACTGTTAATTTCTAAGAGTGTTTCTTTCTAGTTACTATTTCTGCCATATCCTTTTCCTTTTGCTACTTGGGtagaaaatatggaaaatatcatttttagaTTTGCCATATTGATAAATGTGTTGGTGTATTACTTTGTAGGAATGTGATTCCCAAATCAAATGCAACAGCAGTATTAGCAATAGGTCTGATCAGTGTGTCACTTGTACTTAATGAAAACCTTGGCTTATTCCAGATAGAATGTATAGTATGGAactgttttgggtttttttgttttgttttgtgttattgttttttttttttttggactataAGTGTCGTTCAGTATTAGTTAGCTAGTTCATTTGTGGTTTTGTTGAAGAGGTTTACTTAAGACTTGAAGGCAAACAGGGTTAAAGTTAGATCCAGTTAATttataatgcaataataataattaatatgtacGTACAGTGTTCTCTCTTATTTGTCctgaaaataatacactttacaCGACTTTATAGCTTAGCTGCATATTTCAGTCAGTAAAGGAAAAGATTTAGGTGGCGTTtctactttcttttcttttttttttttttttttttgctttatttaacatctacaCAACAGCAGTAGCTTTGGCATTCAAAATTAACACTCTACTATCACCGAATTTCTGTCATGTTACAACCTTCAAAATGCCAGTTACACATTTTACTTACGTTCTCTAAGAGTTATTATTCTGTCAGAGACAGGCTACTACACTGATACAGTTCTCATGAGCTGTGCTAAAAGGCCAGTGCCAGTTACAGTAATCATTTTTAGTAATGTACTTTGCTGCTGTTCCTTTATATACACAATAATCACACTGATTCAAAGCAAGGACAAGCACAACTTATTATTCACACCATACTTATGAATAACATTTCCCCCGCTTATATCCTAACCAGAGGCTCATCTGCTGGTGTTTTTTAATAAGATGAGAGCATTTCTGAACACACAAATGTGATACTTACATGGTGGATTGCtgatgtacatatatacatatatgaaaatgtatttatattttttgttgttactGTATATCTGTTAACTATATTTTCATAGATACTGTATGATGTTTGGGTCCTCATTTGTGTTTTGAGTAAAATGCCCTTTGGTTTGCTAGTTCgcatgaaattattttaatataagaaTTGACTTCTGTTTATTATATAATGGTGGGcactgaagaaaagcagctgtGGAATTAGACCTCTTAGATCATTGCATGTTTTTCAGGGGAGTACTGCTGGATTTTTCGATTCTTTAATGATGGTTCTAGTCACAGGTTAAGTCCAAATCAATGGTTTACTATACATTTGAGACAATATGAGAAAGAATTGTTTGCTTTATGTACTAAAGTATTTTGTTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54602 True 1638 lncRNA 0.32 1 14286650 14288287
TU54604 False 801 lncRNA 0.34 1 14287418 14288218
TU54606 False 1569 lncRNA 0.32 1 14286650 14288218

Neighbor

gene id symbol gene type direction distance location
soul2 NA coding upstream 89576 14193834 ~ 14197074 (+)
fancl fancl,LOC107585345 coding upstream 230187 14035638 ~ 14056463 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 653172 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 856390 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 881975 13385486 ~ 13404675 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 1095 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 8047 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 43205 14331492 ~ 14341288 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 58310 14346597 ~ 14351235 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 306915 14595202 ~ 14611970 (+)
G46176 NA non-coding upstream 103004 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 103457 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 390115 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 396801 13889279 ~ 13889849 (+)
LOC113545747 NA non-coding upstream 641312 13644120 ~ 13645338 (+)
G46337 NA non-coding downstream 99742 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 329321 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 677619 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 725836 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 791526 15079813 ~ 15084310 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 108 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 785600 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1252300 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1281327 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1349348 12929559 ~ 12937302 (+)
cgas NA other downstream 73080 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 684281 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1505119 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1782427 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1836340 16124627 ~ 16134002 (+)

Expression


Co-expression Network