G46304 (LOC108263835)


Basic Information

Item Value
gene id G46304
gene name LOC108263835
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14289556 ~ 14291633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU54707
CCATTCTCTTCTGCGCTCCATCATTCTCCAAGTATCTCTCTGTTTCATCAAGCTGTTCCATTGTCTGTAGTGGTAGATCTATATCCAGAGTTTCAACATCCTCCTCACACATGTGTCCTTGAATCATGGCTTGCAGGTCTTTTAGCACAGCCCACTGCCTctgttgttcttcttttatcTCCAGCAGGAGTGATATGATTTTTCTTTGAGCTGCAGTTTCTGGTgaggaggaggaggaggaggatgttGATGTGGATGTTGATGTGGATGTGTTTggcattaactttttttcttccactAGCTCTTCGTGATAAGACTCCGGGAGAGAGCCTGTGATGAAGTGAGGGTCACTCCTCCGCGGTAAATCCTCCACACGCTTCGAGTCCTCTCGTCTGGATATTTCAGCAGACAGATGGTTCATTTCCTGGGACACAGCAGAGAGTCGCTGCTGAAGTGTGTCCAGTGCCATGTCTGCCATGTGTTTGTTCACCAGCCCCTCCACCCGCCGCTCCATCGCCCACTTCGAGCTGGTGCCATTACTGCCTTCCATCGCTCTTATTCTAGCTGACTAGCCTACACAGCGCGACTTCACAACACCTCAACTCTTCTTTTTTACTAAGCACATAAGACAAAGACTTGCGAAGAAAACAGGCGGAAGTGGTTGTCAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108263835

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54707 True 669 lncRNA 0.48 2 14289556 14291633

Neighbor

gene id symbol gene type direction distance location
vrk2 vrk2 coding downstream 220578 14056142 ~ 14068978 (-)
LOC117596880 NA coding downstream 255839 13852493 ~ 14033717 (-)
papolg papolg coding downstream 717746 13556873 ~ 13571810 (-)
rel rel coding downstream 735007 13545526 ~ 13554549 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding downstream 752689 13531660 ~ 13536867 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 76554 14368187 ~ 14387373 (-)
kcnq5a kcnq5,LOC107718835 coding upstream 97354 14388987 ~ 14514886 (-)
LOC113537600 rims1 coding upstream 229305 14520938 ~ 14595086 (-)
ogfrl1 ogfrl1 coding upstream 339262 14630895 ~ 14642737 (-)
smap1 smap1 coding upstream 381448 14673081 ~ 14778488 (-)
G46183 NA non-coding downstream 105470 14183768 ~ 14184086 (-)
LOC113543535 NA non-coding downstream 648032 13632755 ~ 13641524 (-)
G45755 NA non-coding downstream 824817 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 976400 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 979316 13308094 ~ 13310240 (-)
G46590 NA non-coding upstream 321908 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 322883 14614516 ~ 14614764 (-)
G46576 NA non-coding upstream 326020 14617653 ~ 14625970 (-)
G46680 NA non-coding upstream 645463 14937096 ~ 14937309 (-)
G46711 NA non-coding upstream 720614 15012247 ~ 15012450 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 97313 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 854070 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1258360 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 1649954 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 1650233 12639252 ~ 12639323 (-)
sdhaf4 sdhaf4 other upstream 488223 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1121280 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2153063 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2687498 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 3179554 17471187 ~ 17476092 (-)

Expression


Co-expression Network