G46337


Basic Information

Item Value
gene id G46337
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14388029 ~ 14388311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU54753
CCTGCTTTGGACTGAGTGAGCGAATGCTGTTACGCGGTGATACAGCGGAAGAAGTTCCCATTGACGTTACGAtttaagtgtatttatatactatacGGCATACTACTTCTATGAAAATGTTCTAAAGtcacttgtttaaaaaaacagaatcgATACTTGTTTTAGAGAATCGATTCTTTTGATACAGTGGCAGTATTGAAAATATCGATACTTTAGGATCGATCCGCCCATCcctattttaaatgttatggtTAAACAAGCGTGTCACTCCTTTCGGGTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54753 True 283 lncRNA 0.38 1 14388029 14388311

Neighbor

gene id symbol gene type direction distance location
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding upstream 36794 14346597 ~ 14351235 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding upstream 46741 14331492 ~ 14341288 (+)
rin2 rin2,LOC105893488 coding upstream 59730 14296334 ~ 14328299 (+)
si:dkey-187a12.4 LOC108263835 coding upstream 95166 14289382 ~ 14292863 (+)
soul2 NA coding upstream 190955 14193834 ~ 14197074 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 206891 14595202 ~ 14611970 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding downstream 270445 14658756 ~ 14672999 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding downstream 469618 14857929 ~ 14871099 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding downstream 510511 14898822 ~ 14904713 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding downstream 522588 14910899 ~ 14936204 (+)
G46217 NA non-coding upstream 99742 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 204383 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 204836 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 491494 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 498180 13889279 ~ 13889849 (+)
LOC113541837 NA non-coding downstream 229297 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 577595 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 625812 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 691502 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 1030718 15419029 ~ 15419642 (+)
cgas NA other upstream 19929 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 101487 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 886979 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1353679 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1382706 12982406 ~ 13005323 (+)
borcs7 borcs7 other downstream 584257 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1405095 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1682403 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1736316 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1846203 16234514 ~ 16237542 (+)

Expression


Co-expression Network