G46576


Basic Information

Item Value
gene id G46576
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14617653 ~ 14625970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55026
CCATGTAAACATCACTTCATTACTCCAATTCCCCGAATTCTGCTCACCTGCAGAGGACAGATATAACgatcagaaaaacacacagcaatcCGGACTCAAGGGCcacaaaaaaaagggggggaacaaaaaaaataaaaataaataacttttgcTTATTCTTTGTAAGAAGATGGTTCATACTGTAGATTAGGAACTTATGCCATAAGACCATCTCACCTGTCTGttgTTAGGAACTTTGATATGGTCTAAACAAACTTTTGTGTATTACCTTAAAGACTTTGATTCAAATaacttttggggaaaaaactcaCATAGTAATGCAACTGAAatcaaacagcagaataaaTGCTGATTTCTTGTAGCTTGTTCACTTTCGGTGTTCAGTCTTTGGCTACATTTCAAAGCCACCCATGTCAAAATAATTTTCTGTTAAGTGTTTGCACAGCCGGTTCTATAAATGCATCTCACATCTTTAGAGACAGTCCGCCACCTTGTGGTTTAAGAAGGAGCAGCTGCTGTAATGATGTCACAGAATAAAAGTAGACCAAAATAATTGCAGTGGGAGAGGGTGGGACAGAAGGGCAAGAGGAAACAAATCAACAGGACAGCATATACAACAAGATACTGCATATGGAGAGTGAGCCCAGTAATATCTCAAGGATCAAAAGTTGCTTGAGTGTTGGCATATATGTGTAGCATGGTTTCCCAAAACATCAGTATGTAAAACACTGCAAGATGGTAGCAGAAGtatcttttttttttttttttgtttttttttttttaatagcaccTTATATACAGTACGTCTGACAGAACTCCAGCTGTTCTTCTACTGTGTGCCATGTCAAGTGAATGAGGCACATGTGAGAATAGCCATGTTGGATATAGggatgtgtgtctgtgtgttacagtgcttcACTGAAATTCCCAGGGTCTCATATCCCTCCCAGTGTTCAGGGCACGGCGGGAACAAAGCAAACTTTATCAGAACACTGCAATCCCACATTCCGCAGATTCTTAGCACTTGGCAACCGTATAGCACACAGTACAGCAGAGGGGGAGGggtgaaggagagaaagagcaggAAGCAGCGTCCAGAGACCCACTGCTTCCTCAAGTGCGCTCTTACTCTGATTGGTCCCTCAGTTAGCGGACATTAATGTCAGTGGTATTACGGACTAATTCTACTGTACTTTATTCTCGCTCCAGTCTCACCTTGCACTGCTCTTCTCCATTCCTTGATTGTCCTAGCTCActgtccatcacaggacaccgtTTCCAGAAGAGCACTTTATTAAGGTCATTCAAACATGGAGCTTTTAGACATTGGACTGAAAGAAGATGATGTGATGTACAATCCTTCCTCAGCTACAACAAAGTCACATCAAGGTCGCAGAGATCCAACTCTGTGTGTACAACagttcaacaccttctggcctgAATCTACTTTTCTAACTccttttgtctgtttctttttctatccCTATAACCTTAGCAATATCAAACAGATGCACAGATCAGAGAAAGCAATGAGCATGTTGTAAAAGTGAAGAACCATAAATAGTGCTGGGTTATGAGACCTGATGCTCCGGCTCCTGTGATCTCCCTGTACTTTCTGATATGTGTGGATCATTTTATTGATTCTTGCCTCCTCATCAAAGCATTCTTCCTTAAATCACTCTCAAACCACATTTCTCCACTGTAGTTTCTTGAAATTTATGCTCATCCTGGTATCACCTATTAAAAGGCAAAGGTTATAAATTTTAGGTTATAAACTTTTGTGACAACAAACTAAGTTTAATCTGTAGCTATATATAAAAGTACCAACTAATCACCAAGTATGTTAATGAATAACAAACAAATGCTGAATTTTTGCCCTTTCTctctacataacacacacatgcacatttctaTTCACTTGTTTGTTCTCTCCACTTCATCTCCTTCCCACAAGAACCAACACATGCCTTAAGCGAAGATCAGATGAGCGAAAGGCTCTCTGACCTTGTGAGAGGTCACACTTTCGTACTCTCATTCTCGCGCTTAAGCACAGAGGCCGTATTCCAGGCACGAAATGCGCAGTAACAGAACAAGTCATCCATGTCACCTATACACTGATTAACAGAGCTAACTAACTCTCAGAGGTCATTTGCTGTATGCACTGAGGAGTACTTTGTCCCATGACAGAAGAGAAGCAAAAGAAAGCTGggcaaaatgtttaattttggaGTCCCAAGTGCCCGCTCGATTTGCTGCAAGTGGAAGGCCAGTTTCTGGTGCTGCAACAACATAAGCCTTCATCACAAGTGACCAAAATGAGCACCTTGTAACTCCTGATTGTGGTGTTAATAGATCACACCCCCACATGTAGCCTCaactaaaataattaaagagaaaagagTTAGAGTAAGCAGTTCAGAAAAGCTAGACTTACAATAACAAATGACATACAGTCCCACTCTTTCTATTCTCACAAGGCATAAAAAGCCTATACTACTGTTATATTGTCTATGTTAAACATGCAGACTACTGCAAATCAAAAATGCTTATAGTGGTATGTCTTTCTTTCATCTACAGTAGCCTGTTCTACAAATTTCTAACTCTGCTTGGAATAACATAAGATCATTCGTTTCGTTTGTAAGTGAAGAACACCCTGTCCTCTGAAGCAGAAGAAAACCATCGCAAAAGGGCACATAGCAGGGCAGATAATGCAACTGCAGAACATCTGCAGGCCTACAGACATTACTGACTTCCGGTTACATTCAGAAGAGAGGCAGCAGAAGCCACAAAATGAACTCATTAGTAAGCGTTCTCTAAATgaaggaagaaataaatgattatgcAAATTTATTCTCATATATAGGATTCATTGTGATATCATTACATTTTCCACACTCGCAAAAAACTTCCGGGTTCGAATAGAGGCTGTAACTGAAAAAAGCTAAgtgattaaaaacactgaatataCATGAAATAGTGAAATAGTCCGCTCGTTATAATGAGGTCATTTCCGGGTAACCCGGCGCAGActtgaaacacttttaaactGAAACCTAAACTGAAAATTTCCAATTCGGAGATAAACAGTCATGGAGAACGTGCAGCACTGTATCATAAATATTCCACACTCACCGGAGTTTGAGCATCGCTTTCCGCCAACTTCTGTGAACAACTGAACTCGGTGTTCAGTGCCTTTTTCCGCTCGCTGCCTCTTTCCTGTTCAGCCCGCGCTGTTTAGCGGCTCGCCTCGGACTTTTCTGCGCCCTTTTCAAGCAGGTAATTAAGACGCCGTTCTCTAAAAGCGACCCTCGCCATGTTCGTCAGTCTTCTTCACTGTTTTCGACCTGTCTCCAACTTTCAGTCCCGACGCGCTTCCCCTTTTAAACGTCTCTGTTCTCTCAGAGCTCGAACTTTTCCGAGTGTTAAATCACGGAGTACAGTGTAACACCGCACACTACCCTACTAAACAGTGTGGAAAATACTACGCCACATACGGTGTTTAGTGCGGTAGTATGCGGGTTTTGGCGCAGCCCGGTCATTTGTACAACTGTATAATTACGTAACGCTGTTAGTATGCAGAGCGCTGGAAAACTCAAAGTGAGGTGGTTTCTTGGCTCGTCTCGCTCCGTCCGAGTTGTAGCTGAGGACAAGACAGACATCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55026 True 3663 lncRNA 0.41 7 14617653 14625970

Neighbor

gene id symbol gene type direction distance location
LOC113537600 rims1 coding downstream 22567 14520938 ~ 14595086 (-)
kcnq5a kcnq5,LOC107718835 coding downstream 102767 14388987 ~ 14514886 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding downstream 230280 14368187 ~ 14387373 (-)
vrk2 vrk2 coding downstream 548675 14056142 ~ 14068978 (-)
LOC117596880 NA coding downstream 583936 13852493 ~ 14033717 (-)
ogfrl1 ogfrl1 coding upstream 4925 14630895 ~ 14642737 (-)
smap1 smap1 coding upstream 47111 14673081 ~ 14778488 (-)
tlx1 tlx1,LOC107588667,LOC107585374,LOC107694453 coding upstream 159470 14785440 ~ 14791568 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding upstream 186735 14812705 ~ 14815300 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding upstream 336979 14962949 ~ 14966801 (-)
G46591 NA non-coding downstream 2889 14614516 ~ 14614764 (-)
G46590 NA non-coding downstream 3835 14613541 ~ 14613818 (-)
G46304 LOC108263835 non-coding downstream 326020 14289556 ~ 14291633 (-)
G46183 NA non-coding downstream 433567 14183768 ~ 14184086 (-)
LOC113543535 NA non-coding downstream 976129 13632755 ~ 13641524 (-)
G46680 NA non-coding upstream 311126 14937096 ~ 14937309 (-)
G46711 NA non-coding upstream 386277 15012247 ~ 15012450 (-)
G46750 NA non-coding upstream 434886 15060856 ~ 15061173 (-)
G46754 NA non-coding upstream 438548 15064518 ~ 15065999 (-)
G46869 NA non-coding upstream 480947 15106917 ~ 15153696 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 425410 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1182167 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1586457 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 1978051 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 1978330 12639252 ~ 12639323 (-)
sdhaf4 sdhaf4 other upstream 153886 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 786943 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1818726 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2353161 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2845217 17471187 ~ 17476092 (-)

Expression


Co-expression Network