G46638


Basic Information

Item Value
gene id G46638
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14965906 ~ 15011989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55126
ATTTTCTCGATAGATGCAGTTCCCTCTCCAAACATGCACAGAGCCCCATGTACAATTTTTCGATGAAACTTCCATGTGGGACTATAGTCAGCAAATGCTATGTCTTTCCCATCTCGTGTTAAAATGTCTGTAGTAACCTTGAaaagagaaatttaaaaaatgtctttttgtctGGTTGCCCATCACTGTAAAACACTCCACCTTGCTCAGAAACAACATAATGGTATGAATTTTTTGCTAGGAATCTCAGACTGATAAAGGTTACTTACAGTGCGTGGTCTTCCTGCAAATATTTTCCCTTTCTTAAGCAGGACCTCTTTTGCATGGAGATGATTGTTGATGATGATAACTTTATGAGAGCCCATCATAAGCGAATAAATACCTCCATATTTCTTCTGCAGCTGCTGAAAGAAAATATGCGGAGGGCTGTCGCTCCTTAGGCTCAGAAGACTCCCGATAATTGGGAGAGAAGGAAGGTTTGGAGGAGCTCTATCATCTATCAGAAAGGCATGGATTTTCCTCAGATAAAAGGCCACTATGATTACTGCAGCAAATACACAGAAACAAATAAGCCAAGCCATCCTTGGGTATTCAGTAAGTTCAATCAGTCCTACATCAAGAAGTACACTGGCACTCCACAGGCTGTGAGAAAGCTTACAAGTGTATTTTATAGGCCTTCTTCAATGTCACCTCCTTGAACTCTGAATATTTTCACCTCAGCTATCTTTAACAGTCAATGTCAGTTTAAACTCAAAAGAATGGCAATAGTGCAAAACGTGCAAAACACTTTAACAAACCAAATAtgcaaaagcaataaaaaaaagcaacggCAAACAGAAGAACACAACAGCAAACagcaaaaccacaaaaacaacagcaaaacccaaaacacaacagcaaaaccaaatacacaactgaaaaaaacaaaaacacaacagcaaaaccaaaaacacaactgaaaaaaacacagcagcaacaccaaatacacaactgaagaaaaacacaacagcaaaatcaaaaacGTTCTGCAAAACCCAAaatacaactgaaaaaaaacaaaaacacaacagaaaaccaaaaacacaactgaaaaaaa
>TU55127
ATTTTCTCGATAGATGCAGTTCCCTCTCCAAACATGCACAGAGCCCCATGTACAATTTTTCGATGAAACTTCCATGTGGGACTATAGTCAGCAAATGCTATGTCTTTCCCATCTCGTGTTAAAATGTCTGTAGTAACCTTGAaaagagaaatttaaaaaatgtctttttgtctGGTTGCCCATCACTGTAAAACACTCCACCTTGCTCAGAAACAACATAATGGTATGAATTTTTTGCTAGGAATCTCAGACTGATAAAGGTTACTTACAGTGCGTGGTCTTCCTGCAAATATTTTCCCTTTCTTAAGCAGGACCTCTTTTGCATGGAGATGATTGTTGATGATGATAACTTTATGAGAGCCCATCATAAGCGAATAAATACCTCCATATTTCTTCTGCAGCTGCTGAAAGAAAATATGCGGAGGGCTGTCGCTCCTTAGGCTCAGAAGACTCCCGATAATTGGGAGAGAAGGAAGGTTTGGAGGAGCTCTATCATCTATCAGAAAGGCATGGATTTTCCTCAGATAAAAGGCCACTATGATTACTGCAGCAAATACACAGAAACAAATAAGCCAAGCCATCCTTGGGTATTCAGTAAGTTCAATCAGTCCTACATCAAGAAGTACACTGGCACTCCACAGGCTGTGAGAAAGCTTACAAGTGTATTTTATAGGCCTTCTTCAATGTCACCTCCTTGAACTCTGAATATTTTCACCTCAGCTATCTTTAACAGTCAATGTCAGTTTAAACTCAAAAGAATGGCAATAGTGCAAAACGTGCAAAACACTTTAACAAACCAAATAtgcaaaagcaataaaaaaaagcaacggCAAACAGAAGAACACAACAGtaaacaaaacaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55126 True 1096 lncRNA 0.38 3 14965906 14967115
TU55127 False 865 lncRNA 0.39 2 14965906 15011989

Neighbor

gene id symbol gene type direction distance location
wbp1la wbp1l coding upstream 4713 14946833 ~ 14961193 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding upstream 29702 14910899 ~ 14936204 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 61193 14898822 ~ 14904713 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding upstream 94807 14857929 ~ 14871099 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding upstream 292907 14658756 ~ 14672999 (+)
polr1c polr1c,rpac1 coding downstream 12935 15024924 ~ 15029815 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding downstream 22074 15034063 ~ 15058779 (+)
prom2 LOC108263179 coding downstream 47473 15059462 ~ 15078057 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding downstream 73207 15085196 ~ 15090877 (+)
tacc2 LOC108263494 coding downstream 79841 15091830 ~ 15156743 (+)
LOC113541837 NA non-coding upstream 339416 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 577595 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 677619 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 782260 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 782713 14182991 ~ 14183193 (+)
G46713 NA non-coding downstream 2134 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 67824 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 407040 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 461212 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 699148 15711137 ~ 15715524 (+)
cgas NA other upstream 597806 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 679364 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1464856 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1931556 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1960583 12982406 ~ 13005323 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 781417 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1058725 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1112638 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1222525 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1273133 16285122 ~ 16308898 (+)

Expression


Co-expression Network