G46680


Basic Information

Item Value
gene id G46680
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14937096 ~ 14937309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55183
AAACACTGTATCAGCTTgtggtttttaattttatctcaTTGGCATGATTTATGTACACCTTCTGTTGGTTTTTCACTGACAATGTTTCCGGGGAACAGCATGTCTTTGAGACTTTGATGTTATTTACTTAAGGTCTGACTCACGTTTGAGGTTTTCCACAGCAACCTGGGAGAGTAAGGAGACCTGAGTAGAGTGTTAAGGGGCAACACCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55183 True 214 lncRNA 0.41 1 14937096 14937309

Neighbor

gene id symbol gene type direction distance location
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 121796 14812705 ~ 14815300 (-)
tlx1 tlx1,LOC107588667,LOC107585374,LOC107694453 coding downstream 145528 14785440 ~ 14791568 (-)
smap1 smap1 coding downstream 158608 14673081 ~ 14778488 (-)
ogfrl1 ogfrl1 coding downstream 294359 14630895 ~ 14642737 (-)
LOC113537600 rims1 coding downstream 342010 14520938 ~ 14595086 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding upstream 25640 14962949 ~ 14966801 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding upstream 60208 14997517 ~ 15009590 (-)
pcgf6 pcgf6,LOC107716281 coding upstream 81174 15018483 ~ 15024828 (-)
LOC113544576 hps6 coding upstream 141714 15079023 ~ 15084329 (-)
chata chat coding upstream 481433 15418742 ~ 15428240 (-)
G46576 NA non-coding downstream 311126 14617653 ~ 14625970 (-)
G46591 NA non-coding downstream 322332 14614516 ~ 14614764 (-)
G46590 NA non-coding downstream 323278 14613541 ~ 14613818 (-)
G46304 LOC108263835 non-coding downstream 645463 14289556 ~ 14291633 (-)
G46183 NA non-coding downstream 753010 14183768 ~ 14184086 (-)
G46711 NA non-coding upstream 74938 15012247 ~ 15012450 (-)
G46750 NA non-coding upstream 123547 15060856 ~ 15061173 (-)
G46754 NA non-coding upstream 127209 15064518 ~ 15065999 (-)
G46869 NA non-coding upstream 169608 15106917 ~ 15153696 (-)
LOC113538630 NA non-coding upstream 646856 15584165 ~ 15591191 (-)
sdhaf4 sdhaf4 other downstream 152343 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 744853 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1501610 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1905900 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2297494 12639530 ~ 12639602 (-)
c3h10orf53 NA other upstream 475604 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1507387 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2041822 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2533878 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2624095 17561404 ~ 17574422 (-)

Expression


Co-expression Network