G46713


Basic Information

Item Value
gene id G46713
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15014123 ~ 15015181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55220
GTCGGGCTGATGAGCCTTTACCCTCTGGAGTCTCCTGCTGGGCTGGCACACTGACCTGCACTCGAAGTTACTTCTGTTGTTTTGCTGTATTTTGCTGCATCTTCTTGTCCATCTCTGTTGGATTTAGATCGGGTGATTGTGGAGGCCAGGTCATCTGATGCAGCATTCCATCACTCTTCTTCTTGGACAAATAGCTCTTACATAACCtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55220 True 210 lncRNA 0.48 2 15014123 15015181

Neighbor

gene id symbol gene type direction distance location
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding upstream 20053 14977725 ~ 14994070 (+)
wbp1la wbp1l coding upstream 52930 14946833 ~ 14961193 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding upstream 77919 14910899 ~ 14936204 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 109410 14898822 ~ 14904713 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding upstream 143024 14857929 ~ 14871099 (+)
polr1c polr1c,rpac1 coding downstream 9743 15024924 ~ 15029815 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding downstream 18882 15034063 ~ 15058779 (+)
prom2 LOC108263179 coding downstream 44281 15059462 ~ 15078057 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding downstream 70015 15085196 ~ 15090877 (+)
tacc2 LOC108263494 coding downstream 76649 15091830 ~ 15156743 (+)
G46638 NA non-coding upstream 2134 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 387633 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 625812 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 725836 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 830477 14183437 ~ 14183646 (+)
G46765 hps6 non-coding downstream 64632 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 403848 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 458020 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 695956 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 878400 15893581 ~ 15896079 (+)
borcs7 borcs7 other upstream 40055 14972568 ~ 14974068 (+)
cgas NA other upstream 646023 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 727581 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1513073 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1979773 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 778225 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1055533 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1109446 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1219333 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1269941 16285122 ~ 16308898 (+)

Expression


Co-expression Network