G46765 (hps6)


Basic Information

Item Value
gene id G46765
gene name hps6
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15079813 ~ 15084310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55286
tatttttccAATAGTGTCTTCAGAAGTATTTGTTCCTATATGAACATGccaacaaaacagcaaacaacATTTTCATGGCTTCTGCATATCTATATAGTTATATCACCAAAGCAATTGTTAAATGCTTTATCATGCATACTTAAAGTCACCCTAAATCTTTCTGGGGAATTTCTTAAGAGCACGCAGACTGGGcaaagtgtgaaaatgtcaccataGAGCTTCTGCTACATTAATTGAAGAACCAAGGGGAGCTGAAAATCTCAGCTGGTTTtgaacatattagaacaagtgttACTGCATCATTATATATAAGAGCCAATCCTGTTCAAATATGCAACTACAGGCCATGCAACACTGGTTTACCAGAGAAGGAGGAGTCGAAAAGTACACAAATGGGGTTTTCATGTTCCTAAATTAGATTTTCTTGATAAGGTTAAACTTGTATACATGCTTGGAACTGTCATGTCAAGTAATTTATTACTcaatatacagacaggtgacaaagtaaaggaaaaaacaacttAGAGTGTCTAAGTAAGGTGTTGGCCACCGTGAGCTGCCAGGTCCTCTGCAAGTCTCTGGACCTGTACTgaagggatgaacaccattcttccaaaacatctaggtgttttgatgatagtggtggagAGCACAGTCTAAACGTCACTCCacaatctcccataggtgttcaaccgggttgagatctggtgactgcgaaggccatagcatatgatttacatcattttcatactcaaaccattcagtgagccctcgtgccTTGTGAATagtggcattgtcatgttggaggAGACCACTCACATCAAGAGAGAAATGTTTCCTCATAGGATAAATGTGATCAGGCAGAATAAGTTTGTAGTGACTTGTAGTGACCCCTcttaaggggacaagtggacacataccatgccagcaaaatataacaaaaagtAACAAGTGTTTAATCCTTTAACTTATCACCTGTctgtagaaataaattataaatttattaaattttgaatgactttatatacattttgtattaacatattattatatgttcACCACATTACTTACTACAGTTAAGTGTAATTATTATGCACATTTAGATAACATCATCTGTAGTGTTATAGCAATACTCAAATGTTTCACTGCCAGAAGCGGACAGCATGGCTCAGTGCAGCTCCACACTAGGTGCTAATAGATTTCCTGTAATGATTGAACCTCAAGCTGCTCCACCAAAAGCACACCTTTTCAACTGTTACCCTTGAATAAGGCAAGGTTTGTTCTATTTGCAATAAAAGTAACCAGTTtgacatattttatataaaatatactgtgATGTGACTTTGACCCCCATGAATCAGGTCAGTATAAAAGAGCATGCCTTTTTAACACAATGAATGTTCCATGAAGCTTAAATAAGGACACATTCATATTAAATCAAAGAATCATATCATTAaatcaaaaaaacataaaatgatgCTCCAaagaaaccattttttaaaaaatataataaaaagagGCCATACTTAAACTCTGCAGTTCACTAGAGACcaatcaatattttaaaagcCTTTAATGTAGGCCCCATTAAGGTTCCTACATCTCACTTTGGACAAACTGTTATCAGCGATAACACTAAGGCCAACAGTGTCTGGCCTGTGCAAGAACCACAGCCAATGGTGATACTGATCTGATTTGTGTCTGGGAATGTCAGATAGAGGTGACTGGTGATCCAGATGGACTTTTCTCCTTTAGGTCAATGTCCAGATCAGTGTTGACCCGTGCCAACTCTACGACCTGACGTCGAGGTGTAGGGGGAGGGAGGGTGGGGACTGGAGAATGTCTGCATACCTCTGGCTGGATCTTGTCTCTCGCTGGAGAACTTTACTCAGCAGAGGCTTCAGAAGCCCAATGGTGAGCTGACTCCCGTGCAAATGTCCCTGGAACGGGCCAGAGGATTGTGCAGTGGGGGGCAAATTTTTGAGAACTAGGTTTAAAATTCCAGTAACAGTCATGTCTTCCGGACAAAGGGCCCATAGTAAGTCCAGATAGGGGTCCAGGTCTCTGTGCTGGGACACCTCACTCAGCAGTGTGGTGAAAATCTCCTTATTGAGAAGAGGGCTTTGACGGCAGTGCTTCTCGGCCACCTGGGTGACACGGTCCCACTGGCCTTGTCCTATGAGCATGCGGAGGGCCTGCATTACTGCATTAGGCCGCTGGCTACACAACAGCAGCTCCACCTCAAGGTCCTGGCAGACACTTTTACCTGGAAGGACAGCAAGAGCCCGTTTATATAAAGGTAAGCTCTCAGAGTTCTCCTTTCCAAAACTCCAGGAAGACGTAGATGAAGAGCTGGACTGCTGCTGTGCCAGCTCCAGAAACATGGGAAGCCAGCTGGGCTGGAATTTAAACATGGACTGACACAGCAACTCGAAGACTGGCAATGTACCATTGGCTGGGGTGTTTTTCTGCTGACTATTGTAGTAGTTAGGTGTCGTTTGGACAGTGCTTAGAACAATCTTCCATAATTCAGCAGGCGCTTTGGTAGATAATGAGCCCTCGCCGTTGCATCTGAGTTGGAGCACAGCTTGTACGGCTTGCCAGGTCTCGGTAGGGAATAGTTGGAACATACTATTCAGATATTGTAGGTTTTCCCTATCGATTTCTGAGCTGAGTAGTCTGCAGAGTTCCTGCTGAACTAGAGTCTCACAATGACTCTGTAGATCTTTTTCTGAGGCTTTCACCACTGATGCCTTAATGTCCTCCAGGGCAATGAGACTCTTCAGCTCAGAGTTAAGACAGCTTAACAGTTTCTCATGTCCTGAAGAATCCTTCCCTGCCATTTTCATCTTACTGTTGCCCAAGTATTCCCTGATGATGTTTGCCAGTGTGATAGGTGCCTGAAACATCCCGCCCTTCTTGAGTTTTTCGGCTGTTAGCTGTGTGGTGCTAAGACTTCTCTGTTGGTAATATTTACATGCCTCCTCAAACACAGTTTCAATCAAGACAGCACCTAAGTTAATATTCTCTAAATGGGCACCTGCTGGCTTGGATTTTGCTTCAATCTCCTTCTGGATTACCATATATAACCCAGCCTCTGAGAACATCTGTGGGGAATAAGTCTCCAAACAGTTCACAAACAGGAGGCCCTCCCTTTTCAAAGGGATCCTCTCCAACTCCACGCCACACTTAATGTCAATTAGGTACATCATTCTGCCCACTGCTAGTGCAATGACGTCATCATACATGTTCAGGCTGTTTTGAGTCCCACATGTAGTGAGGCAGTTGTCAGGCAGTTTATAAATCTGCCGTAGACTTCCATCTCTTTGCATAATGCAAACCCACCCAGAGCTGAGGAGGAGCAGGATATCCCCATGTCCAGCAGGACTAAAACTATAGATGTCAGGCGGGGTAACGGTGGACAGATAGCCGATGCAGTCCGTGACCAATCTCTTGAAGTCAAACTGTTTGTTTGCTGTGGATTTTCTGATGAAAAGAGTTCCATCACTGGCACTGTGGACCTTATAGACATCGTTCTGAGGGGACCATGATAAAAACACTTTTGTAACACTCGTGCAAGAATCTTCCTTTATATTTGGTAACAAATATACAATATCTCCGGTACTGATAACTGAATAATGAGGATTATTGTGCAGTGCAGTTTTGACTCCACCCAAGGAGATACCCCGTTCATCTACATCAAAAGTCCTTTTACAGATGCAGTATGTGAAGTTACTGCGATCCACACTGGACACTGAAGAGCTCTCTGAGGCTGGTCTCTCCTCACACCATATGATGAAATTCTCACTGATGCAAACTGAAACGATTTTGGCTCTGGAGCTGTTACAGAGATCCACAGTCTGAAGCAAGCTCCATCCAGATTTCCGCTCGGAGAATTTCCATAATTCAGCTTTACCATTCTCAAATATGATTCCAAGCAGAAGGGCTCCATCCTCTGAGTCGTTTTGTTTGAAATAAAGTAGGTCAACTATCGAGACATTCCGTGTCAGCACTAAATCCAGATGCTCCTGGCACTGCACTAGGTGGGCTCTCTGATATCTGTCATGGGTCATGAGACCAGTTCTCGGAGCTTGCTGGATAATGTGGATGTGTCGCCCATCTGGACTAATGCGGATATTAGACAAGCAGCTTTTTGAAGAATTTTTCGCATAAGACTGCTTCAAAAAGTCTTTTAGCTCTTTACCTCTTGTGAAATCGCCGAAATCTGTCGCCTGTTCCAAAACATGTCGTGTCATATTAGCTGAAGGTGAGGAAATCCCGGACTAGGAAGCGAAATAGAGCAGTTAGTCGCTGACAGTTCCTTCACTTTAAGGCACTTTGACCATACAGCGGCGCAGCATATCCATCTTCCGTCGCTTCATCGCATCCATTATAGTTAGCTGATGCCGAAGTGTTCAGAAATAATTATATTCCAAAATAATTATAATCCAAACAAGCCAGACTTTTCCTATGCTTAACAACTCGACCCTTTCTGCTC
>TU55287
TGTCTGCATACCTCTGGCTGGATCTTGTCTCTCGCTGGAGAACTTTACTCAGCAGAGGCTTCAGAAGCCCAATGGTGAGCTGACTCCCGTGCAAATGTCCCTGGAACGGGCCAGAGGATTGTGCAGTGGGGGGCAAATTTTTGAGAACTAGGTTTAAAATTCCAGTAACAGTCATGTCTTCCGGACAAAGGGCCCATAGTAAGTCCAGATAGGGGTCCAGGTCTCTGTGCTGGGACACCTCACTCAGCAGTGTGGTGAAAATCTCCTTATTGAGAAGAGGGCTTTGACGGCAGTGCTTCTCGGCCACCTGGGTGACACGGTCCCACTGGCCTTGTCCTATGAGCATGCGGAGGGCCTGCATTACTGCATTAGGCCGCTGGCTACACAACAGCAGCTCCACCTCAAGGTCCTGGCAGACACTTTTACCTGGAAGGACAGCAAGAGCCCGTTTATATAAAGGTAAGCTCTCAGAGTTCTCCTTTCCAAAACTCCAGGAAGACGTAGATGAAGAGCTGGACTGCTGCTGTGCCAGCTCCAGAAACATGGGAAGCCAGCTGGGCTGGAATTTAAACATGGACTGACACAGCAACTCGAAGACTGGCAATGTACCATTGGCTGGGGTGTTTTTCTGCTGACTATTGTAGTAGTTAGGTGTCGTTTGGACAGTGCTTAGAACAATCTTCCATAATTCAGCAGGCGCTTTGGTAGATAATGAGCCCTCGCCGTTGCATCTGAGTTGGAGCACAGCTTGTACGGCTTGCCAGGTCTCGGTAGGGAATAGTTGGAACATACTATTCAGATATTGTAGGTTTTCCCTATCGATTTCTGAGCTGAGTAGTCTGCAGAGTTCCTGCTGAACTAGAGTCTCACAATGACTCTGTAGATCTTTTTCTGAGGCTTTCACCACTGATGCCTTAATGTCCTCCAGGGCAATGAGACTCTTCAGCTCAGAGTTAAGACAGCTTAACAGTTTCTCATGTCCTGAAGAATCCTTCCCTGCCATTTTCATCTTACTGTTGCCCAAGTATTCCCTGATGATGTTTGCCAGTGTGATAGGTGCCTGAAACATCCCGCCCTTCTTGAGTTTTTCGGCTGTTAGCTGTGTGGTGCTAAGACTTCTCTGTTGGTAATATTTACATGCCTCCTCAAACACAGTTTCAATCAAGACAGCACCTAAGTTAATATTCTCTAAATGGGCACCTGCTGGCTTGGATTTTGCTTCAATCTCCTTCTGGATTACCATATATAACCCAGCCTCTGAGAACATCTGTGGGGAATAAGTCTCCAAACAGTTCACAAACAGGAGGCCCTCCCTTTTCAAAGGGATCCTCTCCAACTCCACGCCACACTTAATGTCAATTAGGTACATCATTCTGCCCACTGCTAGTGCAATGACGTCATCATACATGTTCAGGCTGTTTTGAGTCCCACATGTAGTGAGGCAGTTGTCAGGCAGTTTATAAATCTGCCGTAGACTTCCATCTCTTTGCATAATGCAAACCCACCCAGAGCTGAGGAGGAGCAGGATATCCCCATGTCCAGCAGGACTAAAACTATAGATGTCAGGCGGGGTAACGGTGGACAGATAGCCGATGCAGTCCGTGACCAATCTCTTGAAGTCAAACTGTTTGTTTGCTGTGGATTTTCTGATGAAAAGAGTTCCATCACTGGCACTGTGGACCTTATAGACATCGTTCTGAGGGGACCATGATAAAAACACTTTTGTAACACTCGTGCAAGAATCTTCCTTTATATTTGGTAACAAATATACAATATCTCCGGTACTGATAACTGAATAATGAGGATTATTGTGCAGTGCAGTTTTGACTCCACCCAAGGAGATACCCCGTTCATCTACATCAAAAGTCCTTTTACAGATGCAGTATGTGAAGTTACTGCGATCCACACTGGACACTGAAGAGCTCTCTGAGGCTGGTCTCTCCTCACACCATATGATGAAATTCTCACTGATGCAAACTGAAACGATTTTGGCTCTGGAGCTGTTACAGAGATCCACAGTCTGAAGCAAGCTCCATCCAGATTTCCGCTCGGAGAATTTCCATAATTCAGCTTTACCATTCTCAAATATGATTCCAAGCAGAAGGGCTCCATCCTCTGAGTCGTTTTGTTTGAAATAAAGTAGGTCAACTATCGAGACATTCCGTGTCAGCACTAAATCCAGATGCTCCTGGCACTGCACTAGGTGGGCTCTCTGATATCTGTCATGGGTCATGAGACCAGTTCTCGGAGCTTGCTGGATAATGTGGATGTGTCGCCCATCTGGACTAATGCGGATATTAGACAAGCAGCTTTTTGAAGAATTTTTCGCATAAGACTGCTTCAAAAAGTCTTTTAGCTCTTTACCTCTTGTGAAATCGCCGAAATCTGTCGCCTGTTCCAAAACATGTCGTGTCATATTAGCTGAAGGTGAGGAAATCCCGGACTAGGAAGCGAAATAGAGCAGTTAGTCGCTGACAGTTCCTTCACTTTAAGGCACTTTGACCATACAGCGGCGCAGCATATCCATCTTCCGTCGCTTCATCGCATCCATTATAGTTAGCTGATGCCGAAGTGTTCAGAAATAATTATATTCCAAAATAATTATAATCCAAACAAGCCAGACTTTTCCTATGCTTAACAACTCGACCCTTTCTGCTC

Function

symbol description
hps6 Enables GTP-dependent protein binding activity and small GTPase binding activity. Involved in lysosome localization and protein localization to membrane. Located in lysosomal membrane. Part of BLOC-2 complex. Implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 6.

NR:

description
PREDICTED: Hermansky-Pudlak syndrome 6 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55286 True 4498 lncRNA 0.43 1 15079813 15084310
TU55287 False 2658 lncRNA 0.46 1 15081653 15084310

Neighbor

gene id symbol gene type direction distance location
prom2 LOC108263179 coding upstream 1756 15059462 ~ 15078057 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding upstream 21034 15034063 ~ 15058779 (+)
polr1c polr1c,rpac1 coding upstream 49998 15024924 ~ 15029815 (+)
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding upstream 85743 14977725 ~ 14994070 (+)
wbp1la wbp1l coding upstream 118620 14946833 ~ 14961193 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding downstream 886 15085196 ~ 15090877 (+)
tacc2 LOC108263494 coding downstream 7520 15091830 ~ 15156743 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding downstream 73447 15157757 ~ 15160085 (+)
unc5b unc5b,LOC108263852 coding downstream 175053 15259363 ~ 15322047 (+)
myofl LOC108263542,LOC108442891 coding downstream 240922 15325232 ~ 15354413 (+)
G46713 NA non-coding upstream 64632 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 67824 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 453323 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 691502 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 791526 14286650 ~ 14288287 (+)
G46833 NA non-coding downstream 334719 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 388891 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 626827 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 809271 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 948994 16033304 ~ 16035339 (+)
borcs7 borcs7 other upstream 105745 14972568 ~ 14974068 (+)
cgas NA other upstream 711713 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 793271 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1578763 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2045463 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 709096 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 986404 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1040317 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1150204 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1200812 16285122 ~ 16308898 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G99087 NA non-coding CI01000016 null 9789311 ~ 9793229 (-)
bowfin (Amia calva) G90436 NA non-coding CM030131.1 CM030131.1 4901022 ~ 4910792 (+)