G47160


Basic Information

Item Value
gene id G47160
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15744540 ~ 15746774 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55753
GGACTTACATCTCGGAATCGGTTCCAGTTCTTGATCTTGCGACTGTACTGGGAAATGGTGGCCAGCCACTGCTCGTCTTCCATGAAATTAGCGCTTTTCTCAGCCGCATCTTTGCCACCTCGCTTTCCATCCGCCTGAACCGGAGACCCCGAGAGCATCAGCATCGGGAGGAGAAGAGACACAAGACACAAGAGCACCATGATTCCTGTTAACCAGGGTTCAGCAAGAGAACACCGAGTCAGAGGATCTGTTTCTCCTAACAGCAAGGGATGGATGCTGAACCTTCACTGAAATGTGACCCGATTACAGGATGCTggttacacacactgctgaggggagagagagagagagagagagagagagagagagagatgcagtgtAGCAGTCAGGGAACGGACTACCCAAGGAAAACAGATGGAAGTGACCTTCAGTAGGCCTGGACTAAACACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55753 True 451 lncRNA 0.51 2 15744540 15746774

Neighbor

gene id symbol gene type direction distance location
LOC113544455 LOC108263660 coding downstream 11787 15731459 ~ 15732753 (-)
trmt2b trmt2b coding downstream 21662 15721281 ~ 15722878 (-)
scdb scd coding downstream 26500 15711130 ~ 15718040 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding downstream 36164 15703159 ~ 15708376 (-)
hif1an hif1an,LOC107707391 coding downstream 47685 15680721 ~ 15696855 (-)
tysnd1 tysnd1 coding upstream 27370 15774144 ~ 15777662 (-)
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding upstream 32096 15778870 ~ 15782164 (-)
ppa1b ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733 coding upstream 35825 15782599 ~ 15790106 (-)
LOC113544337 LOC108263461 coding upstream 66791 15813565 ~ 15821008 (-)
zcchc24 zcchc24,LOC107564348 coding upstream 245440 15992214 ~ 16025302 (-)
G47158 NA non-coding downstream 10461 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 47126 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 71082 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 145334 15596729 ~ 15599206 (-)
LOC113538630 NA non-coding downstream 153349 15584165 ~ 15591191 (-)
G47213 NA non-coding upstream 264796 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 524496 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 929276 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 1018935 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 1041745 16788519 ~ 16788729 (-)
c3h10orf53 NA other downstream 328057 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 959787 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1552297 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2309054 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2713344 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 697922 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1232357 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1724413 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1814630 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1831404 17578178 ~ 17661419 (-)

Expression


Co-expression Network