G47213


Basic Information

Item Value
gene id G47213
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16011570 ~ 16013344 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55810
GGGTACTATGGGAATGTTTTTACAGTCTGACCTGAGATCTTCCTTCTATTCTAACTCAGTCTTGCAGACATCCAGTTACTCAAGTTCCTAAACCccatcatttgtgtgtgtgtgaaagagagatagagaaagagagaaagtgagtgagttgCTCAGATTATGTgaaggagacagagacacattGCTGGGGCTATCTGAGAGCGGATAGCGAAACAGAGGCTGAAATGTAAACAGATAGGGCTTATCTGGGACGCTAGAGATATAACAGAAGGCATTTTCCTCTTGAAACGACAGTCGGCATTTGGGTTGCTGCTCCATTCTGTTGCAGAAAGAGATGTGCATCTTCATGGCTGTGTAGCACACAACAGGCGACTATCAAAGCTTATTTAAAGAAATGGGCAATGTGCAGATACATCacaaaaacagcaaagaaaacTGCGCACAAACTGAACTGCAGTGTCAGCATTAAACTAACCATAGGctatattaaaaacacattcgGTTGTCATATGTAAGAAAACAACAGTGTCATGCAATTACAGTTACAATTTATCATTCGTCTGATCTAAAGTAAAGTGGATACGTGTAgctattatttctttttttttttttttgcaaggcaGTCAACCTGCTCTTGTCATTCATCGTCAGGGTAACTTAATCCTATTTTGCAGCTGTACGGGTTGTTATGGGGAGTAGAGTCGGAGCTGGGATTGTGAACATGGAGATGACTAATGCAGAGCTTAATCTTCCAAGAGCAAATGAACAGCTACCAGCTAAGCTGGCCTGCTACATACCACAACTATAGAAGCAAGGAAAACAACTTGGCAAAGACTGATTGGGAAACCTCTGTGAAATTCTAGGAAAAAAGGTTTAGAGTTCTAGGTTATCTGGATTTTGTAcaaatgaagtaaataaTTTTATTGAATTAGTACAGTGGTGATTATAGAAGTGACCTGTTTTTGTGTCACATGTGGTCAACGTAAAAAAATCTGGTGTTATATTCCTATGGCCCTGTCAAATAGTCTCCTTTCCATGTTCTGTGCTGTTACACACATGTGCTTTTTTAGCAGTGAGTGTTTAAGGTGTGAAAGTGGCCTCAGAGAATCTGTTCGGTCTTGCCTACTAAAATTGTCAACTCAGCTTTATCTGCTGAAGACATTTGGCCATACCAGCTAATGCTGATGCTAACGCAATCTTTTTTCCAATGAAACCTGATGCACTGAAAACATTTATCTACACACCAGGCGAAGAGAAAGCCTTCTCCTTAGAAACTGAAGAACACAATGCACCTATTCACAATTAAGTCTCGCACACACTCTGTTTTGAAGTTCAAAACCTATTTAAACCCACTCATATTTAGATATTAATTAGTGGTTGAGACCACTGATATGGCTATTGTAAGGGGTGACACAGATGCCAGATATAGAGATGGATGACTAGTAAACTGTTAGAATTAGTTTGTACTTAATGCTGAACTTAGTGAACTTTGTTTAGATCATAAGAATTGCTAAAATGTATTTAgactttaaaaagaaacataaaaacaaaactgttgtAGCTCAATCTGTGCAAATACAAGGCGTGTAGCCTTCACTATCCTACTATCCTTTAATGTCCTTTCCATGAACATGAGCACATTTGtcatatattaaattattaaatgaccAAATGTATCAAACAGTAAATTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55810 True 1694 lncRNA 0.38 2 16011570 16013344

Neighbor

gene id symbol gene type direction distance location
LOC113544337 LOC108263461 coding downstream 190562 15813565 ~ 15821008 (-)
ppa1b ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733 coding downstream 221464 15782599 ~ 15790106 (-)
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding downstream 229406 15778870 ~ 15782164 (-)
tysnd1 tysnd1 coding downstream 233908 15774144 ~ 15777662 (-)
LOC113544455 LOC108263660 coding downstream 278817 15731459 ~ 15732753 (-)
wu:fj13e08 LOC108262408 coding upstream 13792 16027136 ~ 16032780 (-)
si:dkey-275b16.2 paox coding upstream 19906 16033250 ~ 16042031 (-)
rassf4a rassf4 coding upstream 31991 16045335 ~ 16076953 (-)
tmem72 tmem72 coding upstream 66606 16079950 ~ 16162197 (-)
LOC113545059 NA coding upstream 179983 16193327 ~ 16205453 (-)
G47160 NA non-coding downstream 264796 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 277491 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 314156 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 338112 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 412364 15596729 ~ 15599206 (-)
G47359 NA non-coding upstream 257926 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 662706 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 752365 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 775175 16788519 ~ 16788729 (-)
G47882 NA non-coding upstream 995496 17008840 ~ 17009049 (-)
c3h10orf53 NA other downstream 595087 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1226817 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1819327 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2576084 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2980374 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 431352 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 965787 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1457843 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1548060 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1564834 17578178 ~ 17661419 (-)

Expression


Co-expression Network