G47672


Basic Information

Item Value
gene id G47672
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16838182 ~ 16838401 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU56374
GATaaattaggcagcaagtgaacagtcagctcTCAAAGTTGATCtattagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacagctgggtcagagcatctccaaaacgccaggtcttgtggggtgttcctggtatgcagtggttagtatctaccaaaagtgatccaaggaaggacaactggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56374 True 220 lncRNA 0.47 1 16838182 16838401

Neighbor

gene id symbol gene type direction distance location
slc25a28 slc25a28,LOC107601050,LOC107719215 coding upstream 14122 16807900 ~ 16824060 (+)
golga7bb LOC108443489,LOC108263631,LOC107375346,LOC103368019 coding upstream 147568 16676120 ~ 16690614 (+)
mettl18 mettl18 coding upstream 380363 16456418 ~ 16457819 (+)
antxr1d LOC108263270,LOC108443423,LOC106589351,LOC107668779,LOC107708254,LOC107588727,LOC107673963,LOC107757100 coding upstream 415982 16398555 ~ 16422200 (+)
gdf10a LOC108262421 coding upstream 445144 16387991 ~ 16393038 (+)
got1 got1,LOC107601049,LOC107665595 coding downstream 26407 16864808 ~ 16874716 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 59330 16897731 ~ 16948778 (+)
hps1 hps1,LOC107719232 coding downstream 116716 16955117 ~ 16968255 (+)
nkx1.2la nkx1-2 coding downstream 153477 16991878 ~ 16995154 (+)
prkg1a prkg1,LOC108263833,LOC108443637,LOC103355670,LOC100694992,LOC107098368 coding downstream 174231 17012632 ~ 17083433 (+)
LOC117596359 NA non-coding upstream 306802 16492318 ~ 16531380 (+)
G47431 NA non-coding upstream 378271 16459245 ~ 16459911 (+)
LOC117596920 NA non-coding upstream 386417 16442062 ~ 16451765 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding upstream 441144 16395005 ~ 16397038 (+)
G47265 c3h10orf71 non-coding upstream 634658 16192695 ~ 16203524 (+)
G47852 NA non-coding downstream 160779 16999180 ~ 16999395 (+)
G47856 NA non-coding downstream 168105 17006506 ~ 17006922 (+)
G47951 NA non-coding downstream 293061 17131462 ~ 17132001 (+)
G48095 NA non-coding downstream 629547 17467948 ~ 17468148 (+)
G48133 NA non-coding downstream 763473 17601874 ~ 17603154 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 370832 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 529284 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 600640 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 704180 16124627 ~ 16134002 (+)
cxcl18a.1 LOC108263637 other upstream 762532 16070714 ~ 16075650 (+)
LOC113541016 ankrd2 other downstream 135281 16973682 ~ 16977029 (+)
dlg5a dlg5 other downstream 1338340 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 2064037 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 2188567 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 2375806 19214207 ~ 19217276 (+)

Expression


Co-expression Network