G48305


Basic Information

Item Value
gene id G48305
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17902052 ~ 17941322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57144
taaaaaaaaaaaaaaaaaaaaactgcagccaagattaatcatgtcagatctttttccacctttaatgtgagatagcaaccaacaaaattcaagtgcaACACAAATAGAAAGAGGTGGAAAAAatcttacaataacctggttgcataagtgtgtatACCCCttaaatactttgttaaagcaccttttccttgtaatacagcactcagtctttttgggtaagagtctaccaacatAGCACATTTTGagttggcaattttattccactcttccttgcaaaaatgctccagactTATTAAATTGTGAGATGATTTCCtctgcacagccctcttcaagtcttTCCACAATAGgttcaataggatttagatctgggctctggctggatcattccaaaacactgatcttcttctgaagcaATTCCTTTTTTGACTTAGGTTTGTGCTTTGGGTAATTATTGTGCTAGAAGGTGAACTGTTTGTTTATCTTCAGCTGTTTAACaagcctgcaggttttgtaTTAAAACAGACTGGAATTCAGAGCTATCCACAATTCCCCTGACTAGAGTCCCcatcccagctgaagagaagcagccccaaaacatgatgctgccaccaccatgcttcatagTTTGATGTtgtttgggtgataagctgtcttgtttatgtgaaaaacatatctttttatagaattatgcccaaaaagttctcccattttgccacatggtttttatttatttaggtaggcttggatgttttttttgtttttgtttttgtttttttgtgagaaagggcttctgtctagcaaccctaccccatagcccagacatgtgaagaatacaagagattgttgtcacaggCAGTGAgcgaccagtacttgccagatattctaCAGCTTCTTCAATGCtgccataggtctcttggcagcctcccagACGAGTTTTCCTTTATTGTCCTTTCATCAATTtgggagggacgtcctgttcttggtaatgtcacagTAGTGCTCCATTTTGTGCCTTCACAGTTATCCATGGTACATAGATTTGTTCCaaatctaatattttggaaattcttttgtatccCTCTCCTAATCAATACCTGACACTGAGAtcccatacatgctttgtaagctctttgaagaccatggcttcagcagtcagctGAAACCAAGAAGATATCAGGAatatcctacagaaacagcagatctttatttggggttaatcagaatcacttcattgatgtcaggtgtatgataattattgAACATGAgtctgaatgtgattggttcattctgagcacagccccgttataaaagggtgtgcacacttgtgtggatttcacattttttttctttttcctctaaaagatttctatttgtttttcgcTTGAATTTTG

Function

GO:

id name namespace
GO:0061919 process utilizing autophagic mechanism biological_process
GO:0006914 autophagy biological_process

KEGG:

id description
ko04145 Phagosome
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
TU57144 True 1391 lncRNA 0.38 2 17902052 17941322

Neighbor

gene id symbol gene type direction distance location
LOC117595658 LOC108262911 coding upstream 16756 17867571 ~ 17885296 (+)
aifm2 aifm2 coding upstream 37046 17847464 ~ 17865006 (+)
gins1 gins1,LOC107727378,LOC107708421 coding upstream 79280 17818638 ~ 17822772 (+)
LOC113537762 lipp,LOC108263057,LOC108262195 coding upstream 89458 17806659 ~ 17812594 (+)
pitx3 pitx3,LOC103027456,LOC107678606,LOC107708419 coding upstream 103462 17784828 ~ 17798590 (+)
mark3a mark3,mark3a coding downstream 2009 17943331 ~ 17965306 (+)
trmt61a trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545 coding downstream 30404 17971726 ~ 17982745 (+)
LOC113543388 apopt1 coding downstream 70493 18011815 ~ 18015780 (+)
klc1a klc1 coding downstream 77073 18018395 ~ 18046867 (+)
fignl1 fignl1 coding downstream 114804 18056126 ~ 18059166 (+)
G48302 NA non-coding upstream 4596 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 133116 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 298898 17601874 ~ 17603154 (+)
G48095 NA non-coding upstream 433904 17467948 ~ 17468148 (+)
G47951 NA non-coding upstream 770051 17131462 ~ 17132001 (+)
G48323 NA non-coding downstream 44959 17986281 ~ 17986571 (+)
LOC113541886 NA non-coding downstream 140295 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 232978 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 280746 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 519351 18460673 ~ 18462196 (+)
LOC113541016 ankrd2 other upstream 925023 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1434702 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1593154 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1664510 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1768050 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 235419 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 961116 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1085646 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1272885 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1314742 19256064 ~ 19262088 (+)

Expression


Co-expression Network